Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DLD53_RS14685 Genome accession   NZ_CP029569
Coordinates   3016386..3017216 (+) Length   276 a.a.
NCBI ID   WP_213066301.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DA33098     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3011386..3022216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD53_RS14660 (DLD53_14655) ispH 3012063..3013013 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DLD53_RS14665 (DLD53_14660) fimU 3013183..3013656 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DLD53_RS14670 (DLD53_14665) pilV 3013650..3014210 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  DLD53_RS14675 (DLD53_14670) pilW 3014211..3015212 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  DLD53_RS14685 (DLD53_14680) pilX 3016386..3017216 (+) 831 WP_213066301.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DLD53_RS14690 (DLD53_14685) pilY1 3017228..3021082 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  DLD53_RS14695 (DLD53_14690) pilY2 3021095..3021577 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  DLD53_RS14700 (DLD53_14695) pilE 3021574..3021999 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 29248.16 Da        Isoelectric Point: 4.9940

>NTDB_id=254405 DLD53_RS14685 WP_213066301.1 3016386..3017216(+) (pilX) [Acinetobacter baumannii strain DA33098]
MSYLFLSCTEKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTL
TNITNVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQV
AVSIPTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTD
KQTLADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 831 bp        

>NTDB_id=254405 DLD53_RS14685 WP_213066301.1 3016386..3017216(+) (pilX) [Acinetobacter baumannii strain DA33098]
ATGAGTTATCTATTTTTATCGTGTACAGAGAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGT
ACTTATTATTTTATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTA
ATAGCCAAGTTGGCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTG
ACAAATATTACCAATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAA
ACCAACTTCTACATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGG
TTGAAGATGGTGGAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTT
GCTGTCAGTATCCCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAAC
CCAACTTCCTAAAAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTT
CTTTAGAAACTCTGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGAT
AAGCAAACTCTAGCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAA
GCTGACTGAAATCACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.248

96.377

0.957