Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CR916_RS09210 Genome accession   NZ_CP024618
Coordinates   1549829..1550458 (+) Length   209 a.a.
NCBI ID   WP_032186268.1    Uniprot ID   -
Organism   Escherichia coli strain SMN152SH1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1544829..1555458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR916_RS09185 (CR916_09200) ycbZ 1545230..1546990 (-) 1761 WP_062882282.1 Lon protease family protein -
  CR916_RS09190 (CR916_09205) matP 1547176..1547628 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CR916_RS09195 (CR916_09210) ompA 1547704..1548744 (-) 1041 WP_062882317.1 porin OmpA -
  CR916_RS09205 (CR916_09220) sulA 1549101..1549610 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CR916_RS09210 (CR916_09225) sxy/tfoX 1549829..1550458 (+) 630 WP_032186268.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CR916_RS09215 (CR916_09230) yccS 1550421..1552583 (-) 2163 WP_074434046.1 YccS family putative transporter -
  CR916_RS09220 (CR916_09235) yccF 1552593..1553039 (-) 447 WP_062882281.1 YccF domain-containing protein -
  CR916_RS09225 (CR916_09240) helD 1553162..1555216 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 8.9883

>NTDB_id=254377 CR916_RS09210 WP_032186268.1 1549829..1550458(+) (sxy/tfoX) [Escherichia coli strain SMN152SH1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=254377 CR916_RS09210 WP_032186268.1 1549829..1550458(+) (sxy/tfoX) [Escherichia coli strain SMN152SH1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment