Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CS873_RS07200 Genome accession   NZ_CP024610
Coordinates   1400437..1401807 (-) Length   456 a.a.
NCBI ID   WP_099975155.1    Uniprot ID   -
Organism   Lactobacillus terrae strain NIBRBAC000499792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395437..1406807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS873_RS07175 - 1395564..1396133 (-) 570 WP_099975150.1 sigma-70 family RNA polymerase sigma factor -
  CS873_RS07180 rlmB 1396263..1397024 (-) 762 WP_099975151.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CS873_RS07185 - 1397014..1397418 (-) 405 WP_099975152.1 ribonuclease III domain-containing protein -
  CS873_RS07190 cysS 1397411..1398814 (-) 1404 WP_099975153.1 cysteine--tRNA ligase -
  CS873_RS07195 gltX 1398865..1400361 (-) 1497 WP_099975154.1 glutamate--tRNA ligase -
  CS873_RS07200 radA 1400437..1401807 (-) 1371 WP_099975155.1 DNA repair protein RadA Machinery gene
  CS873_RS07205 - 1401821..1402357 (-) 537 WP_241685259.1 dUTP diphosphatase -
  CS873_RS07210 - 1402487..1402789 (+) 303 WP_099975157.1 GNAT family N-acetyltransferase -
  CS873_RS07215 rpiA 1402792..1403481 (+) 690 WP_099975158.1 ribose-5-phosphate isomerase RpiA -
  CS873_RS07220 - 1403492..1404835 (+) 1344 WP_099975159.1 C1 family peptidase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50006.03 Da        Isoelectric Point: 5.7834

>NTDB_id=254232 CS873_RS07200 WP_099975155.1 1400437..1401807(-) (radA) [Lactobacillus terrae strain NIBRBAC000499792]
MAKAKNKFVCQSCGYVSPKYLGRCPNCGAWNQMIEEVERPVDSSATPSRRTSDTSVKAVKLHDVSFEEEPRVQTQLSELN
RVLGGGVVQGSLVLIGGDPGIGKSTLLMQVSGQLQKTGGKVLYVSGEESASQIKMRATRLGIEGDELYIYPQTDMSYIRN
TIEEIKPNYLIIDSVQTMDEPEISSAVGSVSQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKVLEHMVDTVLYFE
GDTHHSYRILRSVKNRFGSTNEIGIFEMQNEGLEEVSNPSEIFLEERLKDSNGSAVVVSMEGTRPILVEVQSLIAPTIFG
NAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVRLDEPAIDLALAMSIASSYKNQGIKPDDCFVGEVGLTG
EIRRVDRIQQRVQEAEKLGFKRIFVPKNNIGKWTSENSIQVIGVDTISDAMNKIFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=254232 CS873_RS07200 WP_099975155.1 1400437..1401807(-) (radA) [Lactobacillus terrae strain NIBRBAC000499792]
ATGGCAAAAGCAAAAAATAAATTTGTTTGTCAAAGTTGTGGATATGTTTCTCCAAAGTATTTGGGAAGATGTCCTAATTG
TGGAGCTTGGAATCAAATGATTGAAGAGGTCGAAAGACCGGTAGATTCTAGTGCTACTCCTAGTAGAAGAACAAGTGACA
CATCAGTAAAAGCTGTCAAGCTACATGATGTCAGTTTTGAAGAAGAACCAAGAGTACAGACACAGCTCTCTGAGCTTAAT
CGTGTTCTAGGTGGTGGAGTGGTTCAAGGTTCATTGGTATTGATCGGTGGAGATCCAGGTATTGGAAAATCAACACTACT
CATGCAGGTATCTGGACAGCTTCAAAAGACTGGTGGCAAAGTATTATACGTATCTGGTGAGGAAAGTGCATCACAAATTA
AGATGCGTGCTACAAGATTAGGTATCGAAGGCGATGAATTATACATCTATCCTCAAACTGACATGAGTTACATTAGAAAT
ACAATAGAAGAAATCAAGCCCAATTATCTAATCATTGATTCAGTTCAAACTATGGACGAACCAGAAATATCATCAGCTGT
TGGATCAGTGTCACAAATTCGTGAAGTTACCGCAGAATTGATGAATATTGCTAAACAACAAAATATTACAGTTTTTGTTG
TAGGTCACGTTACCAAAGGTGGAGCTATCGCTGGTCCTAAAGTATTAGAGCATATGGTTGATACTGTTTTGTATTTTGAA
GGTGACACACACCACAGTTACAGAATACTTAGATCAGTCAAAAATCGTTTTGGTTCGACAAATGAAATAGGTATTTTTGA
AATGCAAAATGAAGGTTTAGAGGAAGTATCTAATCCTTCAGAGATATTTTTAGAAGAACGATTGAAAGATTCTAATGGTT
CAGCGGTTGTTGTTTCTATGGAAGGTACTAGACCGATTTTGGTTGAAGTTCAATCCTTGATTGCTCCAACTATTTTTGGA
AATGCTAAACGAACTGCTACAGGATTAGATCATAATCGAGTATCCGTTATTATGGCAGTTCTGGAAAAACGTGGAAACTT
GATGCTTCAAAATCAAGATGCATATCTAAAATCAACCGGTGGTGTGAGATTGGACGAACCAGCAATTGATTTGGCATTGG
CTATGTCTATTGCTTCCAGCTACAAGAATCAAGGAATTAAGCCAGACGATTGTTTTGTTGGTGAAGTTGGTTTAACTGGA
GAGATTCGCCGAGTAGATCGTATTCAACAACGAGTTCAAGAAGCTGAAAAATTGGGCTTTAAGAGAATATTTGTACCAAA
AAATAATATTGGTAAATGGACTTCGGAAAATAGTATTCAAGTTATAGGTGTTGATACAATATCGGATGCGATGAATAAAA
TTTTCGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

65.132

100

0.651
  radA Streptococcus mitis NCTC 12261

65.132

100

0.651
  radA Streptococcus pneumoniae Rx1

65.132

100

0.651
  radA Streptococcus mitis SK321

65.132

100

0.651
  radA Streptococcus pneumoniae R6

65.132

100

0.651
  radA Streptococcus pneumoniae TIGR4

65.132

100

0.651
  radA Bacillus subtilis subsp. subtilis str. 168

62.445

100

0.627

Multiple sequence alignment