Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DLJ51_RS01755 Genome accession   NZ_CP029560
Coordinates   317299..317787 (-) Length   162 a.a.
NCBI ID   WP_004205558.1    Uniprot ID   A0ABN5LGE9
Organism   Streptococcus sobrinus strain NIDR 6715-7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 312299..322787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ51_RS01720 (DLJ51_01720) recU 312425..313030 (-) 606 WP_019770730.1 Holliday junction resolvase RecU Machinery gene
  DLJ51_RS01725 (DLJ51_01725) - 313106..313630 (+) 525 WP_021673720.1 DUF1273 domain-containing protein -
  DLJ51_RS01730 (DLJ51_01730) gpsB 313720..314058 (+) 339 WP_004205565.1 cell division regulator GpsB -
  DLJ51_RS01740 (DLJ51_01740) - 314508..315662 (+) 1155 WP_019776271.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  DLJ51_RS01745 (DLJ51_01745) - 315674..317170 (+) 1497 WP_019769056.1 cell division site-positioning protein MapZ family protein -
  DLJ51_RS01750 (DLJ51_01750) - 317167..317289 (-) 123 WP_019770733.1 hypothetical protein -
  DLJ51_RS01755 (DLJ51_01755) luxS 317299..317787 (-) 489 WP_004205558.1 S-ribosylhomocysteine lyase Regulator
  DLJ51_RS01760 (DLJ51_01760) - 318064..319671 (+) 1608 WP_019770734.1 ribonuclease Y -
  DLJ51_RS01765 (DLJ51_01765) - 319972..321072 (+) 1101 WP_019769053.1 lactate oxidase -
  DLJ51_RS01770 (DLJ51_01770) - 321277..321678 (+) 402 WP_331811058.1 PTS sugar transporter subunit IIA -
  DLJ51_RS01775 (DLJ51_01775) - 321675..321944 (+) 270 WP_019777237.1 PTS sugar transporter subunit IIB -
  DLJ51_RS01780 (DLJ51_01780) - 321934..322686 (+) 753 WP_021673717.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18139.58 Da        Isoelectric Point: 5.5296

>NTDB_id=254170 DLJ51_RS01755 WP_004205558.1 317299..317787(-) (luxS) [Streptococcus sobrinus strain NIDR 6715-7]
MSKDKDVVVESFELDHTAVKAPYVRLISEEFGPKGDVITNFDLRLIQPNQNSIDTAGLHTIEHLLAKLIRKRMDGLIDCS
PFGCRTGFHMIFWGQQSATEIAKAVKDSLQEIADSITWEDVPGTTIESCGNYKDHSLHSAKEWAKLILSQGISDDAFQRH
LV

Nucleotide


Download         Length: 489 bp        

>NTDB_id=254170 DLJ51_RS01755 WP_004205558.1 317299..317787(-) (luxS) [Streptococcus sobrinus strain NIDR 6715-7]
ATGTCTAAAGATAAAGATGTTGTTGTTGAGAGTTTTGAGCTGGACCACACGGCTGTCAAAGCACCCTATGTTCGTCTTAT
TTCCGAGGAATTTGGGCCCAAGGGCGATGTCATTACTAACTTTGATCTTCGCCTCATCCAACCCAACCAAAACTCCATTG
ATACCGCTGGCCTCCATACCATCGAACACCTTTTGGCCAAGCTCATTCGCAAACGCATGGATGGTCTGATTGACTGTTCC
CCTTTTGGTTGTCGGACTGGTTTTCACATGATTTTCTGGGGTCAACAAAGTGCCACCGAAATTGCCAAGGCCGTCAAGGA
CAGCCTGCAAGAAATCGCCGATTCCATCACTTGGGAAGACGTCCCAGGTACCACTATTGAATCCTGCGGTAACTACAAGG
ACCACAGCCTGCATTCTGCCAAAGAATGGGCAAAACTGATTCTGTCCCAAGGTATCTCAGATGATGCCTTCCAACGCCAC
CTAGTTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(9-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.333

92.593

0.364