Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DLJ51_RS00220 Genome accession   NZ_CP029560
Coordinates   30943..31698 (+) Length   251 a.a.
NCBI ID   WP_019775543.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25943..36698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ51_RS00200 (DLJ51_00200) mreD 26669..27172 (+) 504 WP_019770815.1 rod shape-determining protein MreD -
  DLJ51_RS00205 (DLJ51_00205) - 27263..28588 (+) 1326 WP_002959628.1 CHAP domain-containing protein -
  DLJ51_RS00210 (DLJ51_00210) - 28705..29673 (+) 969 WP_002959627.1 ribose-phosphate diphosphokinase -
  DLJ51_RS00215 (DLJ51_00215) - 29778..30953 (+) 1176 WP_109982337.1 pyridoxal phosphate-dependent aminotransferase -
  DLJ51_RS00220 (DLJ51_00220) recO 30943..31698 (+) 756 WP_019775543.1 DNA repair protein RecO Machinery gene
  DLJ51_RS00225 (DLJ51_00225) plsX 31927..32925 (+) 999 WP_019768931.1 phosphate acyltransferase PlsX -
  DLJ51_RS00230 (DLJ51_00230) - 33028..33273 (+) 246 WP_019770818.1 acyl carrier protein -
  DLJ51_RS00235 (DLJ51_00235) - 33839..33973 (+) 135 WP_255264604.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DLJ51_RS10710 - 34003..34131 (+) 129 WP_019768929.1 hypothetical protein -
  DLJ51_RS10440 - 34186..34329 (+) 144 WP_019785178.1 hypothetical protein -
  DLJ51_RS00240 (DLJ51_00240) - 34591..35412 (+) 822 WP_019770819.1 ABC transporter ATP-binding protein -
  DLJ51_RS00245 (DLJ51_00245) - 35402..36121 (+) 720 WP_109833385.1 hypothetical protein -
  DLJ51_RS10715 - 36363..36491 (+) 129 WP_019768926.1 hypothetical protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29220.63 Da        Isoelectric Point: 6.4945

>NTDB_id=254152 DLJ51_RS00220 WP_019775543.1 30943..31698(+) (recO) [Streptococcus sobrinus strain NIDR 6715-7]
MQTKESRGLVLFNRNYREDDKLVKIFTETAGKRMFFVKHISHSKLASVIQPLTLADFLMKINDSGLSYIDDVKEVQTFKT
INADIFRLSYASYIVALADAAIEDGRHDAPLFAFLVKTLELMEQGLDYEILTNIFEIQILDRFGIQLNFHDCALCHCAGL
PFDFSYKYSGLLCPQHYEKDSYRSHLDPNVPYLLDRFQSISFEDLQTISVKPEMKQRLRRFIDGIYDNYLGLHLRSKKFI
DDLSKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=254152 DLJ51_RS00220 WP_019775543.1 30943..31698(+) (recO) [Streptococcus sobrinus strain NIDR 6715-7]
ATGCAGACTAAGGAATCACGTGGTCTGGTCCTCTTTAACCGCAACTATCGTGAGGATGATAAGCTGGTTAAGATCTTTAC
AGAGACAGCAGGCAAACGAATGTTTTTCGTGAAACATATCAGCCACTCTAAGTTGGCATCAGTCATCCAGCCCTTGACCC
TTGCGGATTTTCTCATGAAAATCAATGATTCTGGGCTTTCTTATATTGATGATGTTAAGGAGGTCCAGACCTTCAAGACC
ATCAATGCGGATATTTTTCGCTTATCCTATGCCTCTTATATCGTTGCTCTGGCGGACGCTGCTATTGAAGATGGTCGTCA
TGACGCTCCCCTTTTTGCCTTCTTGGTTAAAACTTTAGAATTGATGGAGCAGGGGTTGGATTATGAGATTTTGACCAATA
TTTTTGAAATTCAAATTTTGGACCGCTTTGGGATTCAATTGAATTTTCATGACTGTGCCCTTTGTCACTGCGCTGGTCTT
CCTTTTGATTTTTCTTACAAGTATTCGGGACTTCTCTGTCCACAACACTATGAAAAAGATAGCTATCGCAGTCATTTGGA
TCCCAATGTTCCTTATCTTCTAGATCGTTTTCAATCGATTTCTTTTGAGGATTTACAGACGATTTCAGTCAAACCTGAGA
TGAAGCAGAGGTTGCGGAGATTTATTGATGGTATTTATGATAATTATCTCGGCCTACATTTGAGGTCCAAAAAATTTATT
GATGACTTGTCTAAATGGGGAGATATTATGAAATAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.542

100

0.645