Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AUF16_RS16900 Genome accession   NZ_CP024590
Coordinates   3416716..3418386 (+) Length   556 a.a.
NCBI ID   WP_016180543.1    Uniprot ID   A0A6I7ZD69
Organism   Enterococcus avium strain FDAARGOS_184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3411716..3423386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS16870 (AUF16_16930) - 3412059..3412916 (+) 858 WP_034876381.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  AUF16_RS16875 (AUF16_16935) xseA 3412932..3414266 (+) 1335 WP_016180538.1 exodeoxyribonuclease VII large subunit -
  AUF16_RS16880 (AUF16_16940) - 3414266..3414487 (+) 222 WP_016180539.1 exodeoxyribonuclease VII small subunit -
  AUF16_RS16885 (AUF16_16945) - 3414487..3415371 (+) 885 WP_016180540.1 polyprenyl synthetase family protein -
  AUF16_RS16890 (AUF16_16950) - 3415397..3416212 (+) 816 WP_016180541.1 TlyA family RNA methyltransferase -
  AUF16_RS16895 (AUF16_16955) - 3416228..3416686 (+) 459 WP_016180542.1 arginine repressor -
  AUF16_RS16900 (AUF16_16960) recN 3416716..3418386 (+) 1671 WP_016180543.1 DNA repair protein RecN Machinery gene
  AUF16_RS16905 (AUF16_16965) - 3418413..3418529 (-) 117 WP_010745911.1 DUF4044 domain-containing protein -
  AUF16_RS16910 (AUF16_16970) - 3418758..3419129 (+) 372 WP_016180545.1 DUF3397 domain-containing protein -
  AUF16_RS16915 (AUF16_16975) mraZ 3419298..3419729 (+) 432 WP_016180546.1 division/cell wall cluster transcriptional repressor MraZ -
  AUF16_RS16920 (AUF16_16980) rsmH 3419745..3420698 (+) 954 WP_016180547.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  AUF16_RS16925 (AUF16_16985) ftsL 3420704..3421081 (+) 378 WP_016180548.1 cell division protein FtsL -
  AUF16_RS16930 (AUF16_16990) - 3421082..3423274 (+) 2193 WP_016180549.1 penicillin-binding transpeptidase domain-containing protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62625.03 Da        Isoelectric Point: 4.5789

>NTDB_id=254115 AUF16_RS16900 WP_016180543.1 3416716..3418386(+) (recN) [Enterococcus avium strain FDAARGOS_184]
MLQELTIKNFAIISSLHLSFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSDKCLVEGLFDLPKQSDFQELM
EELGIEVDEAGLIVQRDLNSSGKSVSRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDSAFQEIKT
TYQIAYREYVTLAKQVKKFKQNEQSFVQRIDMLTFQQEEIGNAELTLGEEEKLMEERDKLTNYQKIVDSLSYSYQAMTNE
ETSSLDAIGSASQELQTIASLDKDYENISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDLVNERLELIHQLKRKYGDS
IESILSYYERISQELLDSDFSGDKLEKLEKELAVKESKLLKLAEKLRTARQEMAKKLEAAIQTELKDLYMENARFEVRFK
EAGFSPEGIDEVEFFITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GQNSQALCITHLPQVAAKADHQLFIRKEVVDGRTLTKVEELTEQDRTEEIARMLAGTEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=254115 AUF16_RS16900 WP_016180543.1 3416716..3418386(+) (recN) [Enterococcus avium strain FDAARGOS_184]
ATGTTACAGGAATTGACAATTAAAAATTTTGCGATCATTTCTTCGTTACATTTGAGCTTCACTGATGGAATGACTGCGTT
AACAGGTGAAACTGGAGCCGGAAAATCGATCATAATTGATGCAGTGAGCTTACTGGCAGGAGCTCGCTCGTCGATTGAAT
ATATTCGCCAAGGCAGTGATAAATGTCTAGTCGAAGGACTTTTTGATTTACCAAAACAATCGGACTTTCAAGAATTGATG
GAAGAGCTTGGAATTGAGGTTGATGAGGCTGGATTGATTGTTCAGCGAGATTTGAATAGTTCAGGAAAAAGTGTGTCACG
TGTCAATGGCAGAATCGTAACTCTCGCAAATCTACGTAGAATCGGACAATTTCTAGTAGATATTCAAGGACAAAATGACC
ATCAAGAACTGATGCATCCAGAATCCCATTTACGTCTTTTAGATAGTTTTGGTGATTCAGCATTTCAAGAAATTAAAACG
ACCTACCAAATCGCTTACCGAGAGTATGTTACCTTAGCCAAACAGGTTAAGAAATTTAAGCAAAACGAGCAGTCCTTTGT
TCAACGGATCGATATGTTGACCTTCCAGCAAGAAGAAATCGGTAACGCTGAACTAACTCTGGGCGAGGAAGAAAAGCTAA
TGGAAGAACGTGACAAACTCACCAATTATCAAAAAATCGTTGACAGTCTTTCCTATAGCTATCAAGCAATGACGAATGAG
GAGACAAGTTCCCTTGACGCTATTGGGTCAGCTAGTCAAGAATTGCAAACAATTGCCTCTCTAGATAAAGATTATGAAAA
CATTTCTGATAATGTGCATAGCGCATACTATCTTTTGCAAGATGCTGTTAGCGAAATTGGTCGCCAGCTGGATCTGTTAG
AGCTTGATGAAGAACGTTTAGATTTGGTTAATGAGCGACTGGAATTGATTCATCAATTGAAACGCAAATATGGTGATTCG
ATAGAAAGCATTTTGAGCTATTACGAGCGAATAAGCCAAGAGCTTCTAGATTCAGATTTTTCTGGAGATAAATTGGAAAA
ACTAGAAAAGGAATTAGCAGTTAAAGAAAGTAAATTGCTAAAATTAGCGGAAAAGCTGCGAACAGCTCGACAGGAAATGG
CGAAGAAACTGGAAGCGGCTATTCAAACTGAGTTGAAGGATCTTTATATGGAGAATGCCCGTTTTGAAGTACGTTTTAAA
GAAGCAGGATTTAGTCCTGAAGGCATTGATGAAGTAGAATTCTTTATTACGACGAATCCTGGTGAACCATTGAAGCCGTT
AGTTAAAGTGGCATCAGGTGGAGAAATCTCACGAGTCATGTTGGCGTTGAAGACGATTTTCTCAAAAACACAAGGGTTGA
CCAGTATTGTGTTTGATGAAGTAGACACGGGGGTCAGTGGTAGAGTGGCTCAGGCGATCGCAGACAAGATTTATCAAATC
GGACAAAATTCTCAAGCGCTTTGTATCACCCATTTGCCTCAAGTAGCTGCTAAAGCTGATCATCAGCTGTTTATTCGCAA
AGAAGTAGTAGATGGACGAACATTGACTAAAGTGGAGGAGCTAACTGAGCAAGACCGTACAGAAGAAATCGCCCGTATGT
TAGCAGGAACTGAAATTACGGATTTAACTGTTAAACATGCAAAGGAACTATTACAGTTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7ZD69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.947

100

0.502

Multiple sequence alignment