Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DLJ52_RS06850 Genome accession   NZ_CP029559
Coordinates   1417464..1419701 (-) Length   745 a.a.
NCBI ID   WP_019790247.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1412464..1424701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS06830 (DLJ52_06830) - 1413463..1414446 (-) 984 WP_109982679.1 YihY/virulence factor BrkB family protein -
  DLJ52_RS06835 (DLJ52_06835) - 1414451..1415311 (-) 861 WP_109982680.1 methionyl aminopeptidase -
  DLJ52_RS06840 (DLJ52_06840) spxR 1415436..1416716 (-) 1281 WP_109982681.1 CBS-HotDog domain-containing transcription factor SpxR -
  DLJ52_RS06845 (DLJ52_06845) - 1416713..1417261 (-) 549 WP_032798553.1 GNAT family N-acetyltransferase -
  DLJ52_RS06850 (DLJ52_06850) recJ 1417464..1419701 (-) 2238 WP_019790247.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DLJ52_RS06855 (DLJ52_06855) - 1419698..1420471 (-) 774 WP_019775355.1 SDR family oxidoreductase -
  DLJ52_RS06860 (DLJ52_06860) rnz 1420468..1421397 (-) 930 WP_002962358.1 ribonuclease Z -
  DLJ52_RS06865 (DLJ52_06865) - 1421453..1422106 (-) 654 WP_019770478.1 hypothetical protein -
  DLJ52_RS06870 (DLJ52_06870) hflX 1422099..1423337 (-) 1239 WP_109982682.1 GTPase HflX -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 82586.03 Da        Isoelectric Point: 4.3948

>NTDB_id=254113 DLJ52_RS06850 WP_019790247.1 1417464..1419701(-) (recJ) [Streptococcus sobrinus strain NIDR 6715-15]
MISSKFDWKQVDQAPSEPFLELAKKENLDNLAAGILYERGIDDQAKLHDFLSADLSQLHDPYLLHDMDKAVERIRSAIEA
GQQILIYGDYDADGMTSSSIMQEALEMLGAEYQVYLPNRFTDGYGPNLSVYKYFIEQQEISLIVTVDNGVAGHEAIAYAQ
EQGIDVVVTDHHSLPDNLPDAYAIVHPEHPEGDYPFKYLAGCGVAFKLASALLEGIPNELLDLVAIGTIADMVSLTGENR
ILVKYGLQMLAQTERVGLQELMQLADIEPSDLNEETVGFKIAPMLNALGRLDDPNPAVELLTGFDDQEAGEIAHMIQEKN
EERKQIVQDIYDQALTMIDPDKPAQVLAKEGWHPGVLGIVAGRILESLSQPVILLNIEDSRAKGSARSVEAVNIFAALNP
HRDIFDAFGGHAGAAGMTLPVENLEKLSDALCSYILDNGLDKAGKNSLTIDEELHLPDLSLETIKSLEKLSPFGMDNKKP
VFLLKDFQVLQSRTMGQNGAHLKLKLAQAGAEFDLVAFSQGHLAQEFAQASGLELAVTLSVNKWNGNTSLQLMLVDARVQ
GVQLIDIRAKSAQLPKGVPSLQQLVEADKQAQAVVLLKVPEQASQLKEAFQDQDFSAIYFKNQIKQAYYLTGYGTREQFA
KLYKTIYQFPEFDIRHKLKELADYLKIPDILLIKMIQIFEELDFVTIADGVMTVNKSADKKPISDSQIYQDLVALVKYQE
LMALGSPREIYDWLTGASKNNEQEF

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=254113 DLJ52_RS06850 WP_019790247.1 1417464..1419701(-) (recJ) [Streptococcus sobrinus strain NIDR 6715-15]
ATGATTTCTTCTAAGTTTGATTGGAAACAAGTTGACCAGGCTCCTAGTGAGCCCTTTTTAGAGCTGGCAAAAAAAGAAAA
TTTGGATAACCTGGCAGCCGGTATTCTCTATGAAAGGGGAATTGATGACCAGGCCAAGCTCCATGATTTTCTGTCAGCTG
ACCTGTCCCAACTCCATGATCCTTATTTACTTCATGATATGGATAAGGCTGTCGAGCGGATTCGTTCTGCCATTGAAGCT
GGCCAGCAAATCCTGATCTACGGGGACTACGATGCCGATGGCATGACCTCCAGCTCTATTATGCAGGAGGCCCTGGAGAT
GTTGGGGGCTGAGTATCAGGTTTATCTGCCCAATCGGTTTACCGATGGTTATGGGCCCAATCTCAGCGTTTATAAGTACT
TTATTGAGCAGCAGGAAATCTCTCTGATTGTGACCGTTGATAATGGGGTGGCTGGTCATGAGGCCATTGCCTATGCACAG
GAGCAGGGGATTGACGTCGTCGTTACCGACCACCATTCCCTGCCGGATAATCTGCCCGATGCTTACGCTATTGTTCACCC
CGAGCATCCAGAAGGAGACTATCCCTTTAAATATCTGGCCGGCTGTGGTGTGGCCTTCAAACTAGCCTCTGCCCTCTTGG
AAGGTATTCCCAATGAGTTACTGGACCTAGTCGCTATCGGAACCATTGCCGATATGGTTAGCCTGACTGGGGAAAATCGG
ATTCTGGTCAAGTATGGCCTGCAAATGCTGGCTCAGACTGAAAGGGTGGGCCTGCAGGAACTCATGCAGCTGGCTGATAT
TGAGCCTAGCGACCTCAATGAGGAAACCGTTGGCTTCAAGATTGCCCCCATGCTCAATGCCCTAGGTCGCCTAGATGACC
CCAACCCTGCTGTCGAGCTCCTGACTGGATTTGATGACCAGGAGGCTGGCGAAATTGCTCACATGATTCAGGAGAAAAAT
GAGGAACGCAAGCAGATTGTTCAGGATATCTATGACCAGGCCCTGACCATGATTGACCCTGACAAACCGGCCCAGGTCTT
AGCCAAGGAAGGCTGGCATCCTGGGGTCCTGGGCATTGTGGCTGGTCGGATTTTGGAATCTCTCAGTCAGCCTGTTATCC
TCCTCAATATTGAAGACAGCAGGGCCAAGGGATCGGCCCGCTCGGTTGAGGCTGTCAATATCTTTGCTGCCCTCAATCCT
CATCGGGACATTTTCGATGCCTTTGGTGGCCATGCTGGTGCGGCTGGTATGACCCTGCCGGTTGAAAATCTGGAAAAGCT
ATCTGATGCTCTCTGTAGCTATATCCTAGATAATGGTCTAGATAAGGCTGGCAAGAATAGCCTGACCATTGATGAGGAGC
TTCACTTGCCCGACCTGTCTCTGGAGACCATCAAGAGCCTAGAAAAGCTGTCTCCCTTTGGCATGGATAATAAGAAACCG
GTATTTCTTCTCAAGGATTTCCAGGTCCTGCAAAGCCGAACTATGGGACAAAATGGAGCCCACCTCAAACTCAAACTGGC
CCAAGCTGGTGCAGAATTCGATCTGGTAGCCTTCTCCCAAGGCCATCTGGCCCAAGAATTTGCCCAGGCCAGCGGTCTCG
AGCTGGCGGTGACCCTCTCAGTCAATAAATGGAACGGTAATACCAGTCTTCAGCTTATGCTGGTTGATGCTCGAGTGCAA
GGGGTGCAACTCATTGATATTAGGGCTAAATCGGCCCAGTTACCTAAGGGTGTGCCCAGCCTCCAGCAGCTAGTAGAAGC
TGATAAGCAGGCTCAAGCTGTTGTCCTCCTAAAGGTTCCAGAGCAAGCTAGCCAACTCAAAGAGGCCTTCCAAGATCAGG
ATTTTTCAGCCATCTATTTTAAAAATCAGATTAAGCAGGCCTATTATCTGACTGGCTACGGAACTCGAGAGCAGTTTGCC
AAACTTTACAAGACCATCTATCAATTTCCAGAATTTGATATCCGTCATAAGCTCAAAGAACTGGCAGACTATCTCAAAAT
CCCTGATATTCTCTTAATTAAGATGATTCAGATTTTTGAGGAATTGGACTTTGTGACCATTGCTGATGGTGTCATGACGG
TCAATAAGTCTGCCGACAAGAAGCCTATCTCCGACAGCCAAATTTATCAGGATTTGGTGGCCCTGGTCAAGTACCAAGAA
CTCATGGCCCTCGGAAGCCCCAGAGAAATCTATGACTGGCTGACGGGTGCTTCAAAAAATAACGAGCAGGAATTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(587-734)

DHHA1 domain (DHHA1)

(317-434)

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.342

98.792

0.675
  recJ Bacillus subtilis subsp. subtilis str. 168

36.271

100

0.381