Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DLJ52_RS05310 Genome accession   NZ_CP029559
Coordinates   1087384..1088454 (+) Length   356 a.a.
NCBI ID   WP_109982602.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082384..1093454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS05295 (DLJ52_05295) ffh 1082596..1084170 (+) 1575 WP_109982601.1 signal recognition particle protein -
  DLJ52_RS05300 (DLJ52_05300) - 1084241..1086073 (+) 1833 WP_029238590.1 membrane protein -
  DLJ52_RS05305 (DLJ52_05305) - 1086350..1087220 (+) 871 Protein_993 IS30 family transposase -
  DLJ52_RS05310 (DLJ52_05310) xerS 1087384..1088454 (+) 1071 WP_109982602.1 tyrosine recombinase XerS Machinery gene
  DLJ52_RS05315 (DLJ52_05315) queF 1088600..1089094 (-) 495 WP_019785266.1 preQ(1) synthase -
  DLJ52_RS05320 (DLJ52_05320) queE 1089158..1089874 (-) 717 Protein_996 7-carboxy-7-deazaguanine synthase QueE -
  DLJ52_RS05325 (DLJ52_05325) queD 1089871..1090317 (-) 447 WP_002959215.1 6-carboxytetrahydropterin synthase QueD -
  DLJ52_RS05330 (DLJ52_05330) queC 1090317..1090970 (-) 654 WP_019775285.1 7-cyano-7-deazaguanine synthase QueC -
  DLJ52_RS05335 (DLJ52_05335) - 1091339..1091974 (-) 636 WP_019790079.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41356.60 Da        Isoelectric Point: 9.6993

>NTDB_id=254101 DLJ52_RS05310 WP_109982602.1 1087384..1088454(+) (xerS) [Streptococcus sobrinus strain NIDR 6715-15]
MRRDLLLEKIEELKALMPWYVLDYYQSKLSVPYSLTTLYEYLKEYRRFFEWLMDADLTDAKKLADIPLQVLEHLSKKDME
AFILYLRERPSLNTYSTKNGVSQTTINRTLSALSSLYKYLTEEVENDNGEPYFYRNVMKKVATKKKKETLAARAENIKQK
LFLSDETMEFLDYVDKEYEGKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDMKDVNLNMMVIEVTRKGGKRDS
VNVASFAKPYLEAYLKVRKSRYKAEKGDLALFLSEYRGVPNRIDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=254101 DLJ52_RS05310 WP_109982602.1 1087384..1088454(+) (xerS) [Streptococcus sobrinus strain NIDR 6715-15]
ATGAGACGTGATTTACTACTGGAAAAAATTGAGGAACTAAAGGCCCTTATGCCCTGGTATGTGCTGGACTATTATCAATC
CAAGCTCTCGGTGCCTTATAGCCTCACGACCCTCTACGAATACCTCAAGGAATATCGGCGATTCTTTGAGTGGCTCATGG
ATGCTGATTTGACCGATGCCAAGAAATTGGCGGATATTCCCCTCCAGGTGCTGGAACATCTATCCAAAAAAGATATGGAG
GCCTTTATCCTCTATTTGCGGGAACGACCTTCGCTCAACACCTATTCGACTAAAAATGGTGTCTCTCAGACGACCATCAA
CCGCACTCTGTCGGCTCTTTCCAGTCTTTATAAGTATTTGACTGAGGAGGTCGAAAATGATAATGGTGAGCCCTATTTTT
ACCGCAATGTCATGAAAAAGGTTGCGACCAAGAAGAAAAAGGAAACCTTGGCTGCTCGGGCGGAAAATATTAAGCAAAAG
CTCTTTCTGAGCGATGAAACCATGGAGTTTCTGGACTATGTTGACAAGGAATACGAAGGCAAGCTCTCCAATCGGGCCAA
ATCATCTTTCCGAAAAAATAAGGAACGCGATTTGGCCATTATCGCCCTGCTGCTGGCTTCTGGTGTCCGGCTTTCTGAGG
CGGTCAATCTGGATATGAAGGATGTCAATCTCAATATGATGGTTATCGAAGTTACCCGCAAGGGTGGCAAACGAGATTCG
GTCAATGTAGCAAGTTTCGCCAAGCCTTATCTAGAGGCTTACCTTAAGGTTCGTAAGAGTCGTTATAAGGCCGAAAAAGG
TGACCTTGCCCTCTTTCTTTCCGAATACCGGGGTGTCCCCAATCGTATTGATGCTTCCAGTATCGAAAAAATGGTAGGCA
AGTATTCGCAAGACTTTAAAATCCGAGTAACTCCTCACAAGCTCCGCCATACCCTGGCTACTCGTCTTTATGATGCGACC
AAGTCTCAGGTTCTGGTCAGCCACCAATTGGGACACGCTTCTACTCAGGTTACCGACCTCTACACCCATATCGTCAACGA
CGAACAAAAGAATGCCCTGGACAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

81.18

100

0.812