Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AUF16_RS11825 Genome accession   NZ_CP024590
Coordinates   2381153..2382100 (+) Length   315 a.a.
NCBI ID   WP_016179387.1    Uniprot ID   A0AAV3J570
Organism   Enterococcus avium strain FDAARGOS_184     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2376153..2387100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS11795 (AUF16_11810) - 2376561..2377544 (+) 984 WP_049221946.1 thermonuclease family protein -
  AUF16_RS11800 (AUF16_11815) - 2377632..2378708 (-) 1077 WP_049221945.1 zinc-ribbon domain-containing protein -
  AUF16_RS11805 (AUF16_11820) - 2378868..2379635 (-) 768 WP_049221943.1 SDR family NAD(P)-dependent oxidoreductase -
  AUF16_RS11810 (AUF16_11825) - 2379738..2380124 (-) 387 WP_048721553.1 carboxymuconolactone decarboxylase family protein -
  AUF16_RS11815 (AUF16_11830) - 2380221..2380583 (+) 363 WP_065422893.1 MerR family transcriptional regulator -
  AUF16_RS11820 (AUF16_11835) - 2380723..2380923 (+) 201 WP_048721549.1 DUF4177 domain-containing protein -
  AUF16_RS11825 (AUF16_11840) ceuB 2381153..2382100 (+) 948 WP_016179387.1 ABC transporter permease Machinery gene
  AUF16_RS11830 (AUF16_11845) - 2382097..2383065 (+) 969 WP_016179386.1 iron chelate uptake ABC transporter family permease subunit -
  AUF16_RS11835 (AUF16_11850) - 2383062..2383820 (+) 759 WP_016179385.1 ABC transporter ATP-binding protein -
  AUF16_RS11840 (AUF16_11855) - 2383882..2384847 (+) 966 WP_049221941.1 siderophore ABC transporter substrate-binding protein -
  AUF16_RS11845 (AUF16_11860) - 2384896..2385555 (-) 660 WP_049221938.1 Crp/Fnr family transcriptional regulator -
  AUF16_RS11850 (AUF16_11865) - 2385590..2386126 (-) 537 WP_049221936.1 DNA-binding protein -
  AUF16_RS11855 (AUF16_11870) - 2386128..2386358 (-) 231 WP_048720065.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34254.33 Da        Isoelectric Point: 9.8156

>NTDB_id=254099 AUF16_RS11825 WP_016179387.1 2381153..2382100(+) (ceuB) [Enterococcus avium strain FDAARGOS_184]
MRKIGILLVLFLLSALSIFIGVKDLVLQALFQGDSQQWLILATTRVPRTVSLILAGATMSICGLIMQQLTQNKFVSPTTA
GTMDSARLGILLVMLFLPNASTTVRTLAAFIFAFLGTMVFLGLSRLLPTKEPIFLPLLGVMFGNIVGSVATFFAYQFQLI
QNMSSWLQGNFSLVAKGSYELLYLTIPLFLVIYLFAYYFTIVGLGEDVAINLGVNYRLIQTLGIGLVAAASGLVLIMVGT
VPFLGVIVPNIVSLIYGDHVKQNLWITAVSGSLFLMVCDILSRIVIAPYEIPVSLTVGILGSLIFIYLLVGRKRA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=254099 AUF16_RS11825 WP_016179387.1 2381153..2382100(+) (ceuB) [Enterococcus avium strain FDAARGOS_184]
TTGAGAAAAATAGGGATTCTTTTGGTTTTATTTTTGTTAAGCGCTCTCTCTATTTTTATCGGAGTAAAAGATTTGGTGCT
GCAGGCTTTATTTCAAGGAGATTCACAACAGTGGCTGATTCTTGCTACTACACGTGTACCGCGTACCGTCAGCTTGATTT
TAGCAGGCGCAACGATGAGTATCTGCGGTCTGATTATGCAGCAGCTCACACAAAATAAATTCGTTTCACCAACAACTGCT
GGCACGATGGATAGTGCCCGTTTAGGAATTTTATTGGTCATGCTCTTTTTGCCTAATGCTTCTACGACTGTTCGGACTTT
GGCCGCATTTATTTTTGCCTTTCTTGGTACGATGGTTTTTCTGGGGTTAAGTCGGTTGCTCCCAACAAAGGAGCCGATTT
TTTTACCCTTATTAGGGGTAATGTTCGGTAATATTGTCGGATCAGTCGCTACCTTTTTTGCTTATCAGTTTCAGCTGATT
CAAAACATGTCTTCGTGGTTGCAGGGGAATTTTTCACTAGTGGCTAAAGGCAGCTATGAATTGCTTTATCTAACGATTCC
ACTGTTTTTGGTTATCTACTTATTTGCCTATTATTTCACAATTGTTGGCTTAGGCGAAGATGTTGCCATTAATTTAGGCG
TGAATTATCGCTTGATCCAAACGCTTGGGATTGGTCTCGTTGCAGCAGCCAGCGGACTGGTTTTAATCATGGTGGGGACC
GTTCCTTTTTTAGGTGTGATCGTGCCGAATATCGTTTCGCTTATTTATGGAGATCATGTAAAGCAGAATCTATGGATTAC
CGCAGTGAGCGGCAGTCTATTTTTAATGGTCTGTGACATTCTCTCCCGCATCGTCATCGCACCATATGAGATACCAGTCA
GCTTGACGGTCGGTATTTTAGGCAGCTTAATCTTTATTTACTTATTGGTTGGGAGGAAACGTGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.839

98.73

0.492

Multiple sequence alignment