Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   DLJ52_RS03725 Genome accession   NZ_CP029559
Coordinates   747280..750618 (+) Length   1112 a.a.
NCBI ID   WP_109982521.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 742280..755618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS03705 (DLJ52_03705) - 742569..743408 (+) 840 WP_019770379.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  DLJ52_RS03710 (DLJ52_03710) - 743421..743837 (+) 417 WP_019768679.1 PTS sugar transporter subunit IIA -
  DLJ52_RS03715 (DLJ52_03715) - 743840..746032 (+) 2193 WP_019768678.1 glycoside hydrolase family 31 protein -
  DLJ52_RS03720 (DLJ52_03720) - 746040..747032 (+) 993 WP_019768677.1 LacI family DNA-binding transcriptional regulator -
  DLJ52_RS03725 (DLJ52_03725) rexB 747280..750618 (+) 3339 WP_109982521.1 ATP-dependent nuclease subunit B Machinery gene
  DLJ52_RS03730 (DLJ52_03730) rexA 750618..754289 (+) 3672 WP_109982522.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1112 a.a.        Molecular weight: 127099.02 Da        Isoelectric Point: 4.7514

>NTDB_id=254089 DLJ52_RS03725 WP_109982521.1 747280..750618(+) (rexB) [Streptococcus sobrinus strain NIDR 6715-15]
MRLVYTDIRNHLTDQLAQLAQEYARAGRRVFYIAPNSLSFEKERRVLEVLPEEASFNITITRFAQMARYFVLNDVSNKKP
VTETGLAMIFFRVLSQFEDDDLKIYGSLRKDSNFIQQLVEIYQELQRSNLTISDLADLESEVKYQDLLTIFSAFYQALQE
ENFESQTKIAQFLDHVDSGQLDQDLKNLVVIVDGFSRFSAEEEALVTALHDRGVEIVIGTYASHKAYKSSFLAGNLYQAN
VEFLLDLGQKFGVRAEILGQKQNDSLARLSALLEARRDFSSELPEISAADKQVLTIWEVVNQKEEVEELARSIRSLLNKG
VRYKDILVLLGDLDAYELQIGKTFSKYDIPYYLGKQEAMSHHPLVNFVESLERIKRYNFRAEDLLNLLKSGLFKDLTDTE
IDKFEQYVRYADIKGQAKFKQDFTANIQTGVNEDGQAIEKYDLAALNQIRQVVMEPLLELFSSRSLLAKNLLTNKFLPFL
EAIDLPNNMANLAKGKSEGVLEREGEVWQSFCDLLNEIEEIFGQTKLSLDDFLALLGQGMAASTFKLVPATLDVVNVKDY
KLIEPHSSSYVFAIGLTASNFPRLSQTTGLLTDEERQQLNESLANRDLQGHFDLSGLEDVKKFHSVMISLVNSATERLIL
SAPQIYADNQDQLSPYLQELVDLGFEPVLKQAQGFGDKPSDLGTYKALLSRIIEANQLNQNEDLDKAQATFWAVMVRRLR
QKLAQADIHIPTISDNLSVEPLSQESLDLLYPADQPLKLSASSLTTFYNNQYGYFLQKVLNLQEEDSIHPDFRHHGIYLH
RVFERLMTKLDDGADFDQILDQTLLQVKQEATFKQLYSYDQEAVFSREILEGIAQGMTPILRNNPLVRVLDKAQARHYLG
QENWQKTSADQKALELGFNLQLPLDQERQLEIRGQIDRLDQLVDSDSLGVVDYKSGDKKFSLEEFYNGLSPQLLTYILAL
KESMPMDYQAEIFGAGYLHLQNPELKFSDVASFGQSLEKFTKLFKYQGLYVKEMASQLKPYFNTSAARIFSQEEIAWLLD
YTKELYRQAAKTILSGHFAINPYTEDRRTVEGQQFKTITGFEADRHMRYARQITKASRDQLLEKMKEQGGEA

Nucleotide


Download         Length: 3339 bp        

>NTDB_id=254089 DLJ52_RS03725 WP_109982521.1 747280..750618(+) (rexB) [Streptococcus sobrinus strain NIDR 6715-15]
ATGCGATTAGTTTACACCGATATTCGAAATCATCTGACAGACCAATTGGCTCAGCTAGCTCAGGAATATGCCCGGGCCGG
ACGGCGAGTCTTTTATATTGCCCCCAATTCTCTTTCCTTTGAGAAGGAGCGGCGGGTTTTGGAGGTCCTGCCAGAAGAGG
CTTCCTTCAACATTACTATCACGCGCTTTGCTCAGATGGCTCGCTATTTTGTGCTCAATGATGTCTCTAATAAAAAGCCG
GTAACCGAAACCGGTCTGGCCATGATTTTCTTTCGGGTGCTGTCCCAATTTGAAGATGATGACCTGAAAATTTATGGCAG
TCTGCGAAAGGATTCTAATTTTATCCAGCAGTTGGTGGAGATCTACCAAGAGTTGCAGCGATCTAATTTGACCATCAGCG
ATTTGGCGGATTTGGAGTCGGAGGTCAAGTACCAGGACTTGCTGACTATTTTTTCAGCCTTCTATCAGGCCTTGCAGGAG
GAAAATTTTGAGTCACAAACAAAAATTGCTCAATTCTTGGACCATGTAGATAGTGGACAGTTGGACCAAGACTTGAAAAA
TCTGGTTGTCATTGTTGATGGCTTTAGTCGTTTTTCAGCCGAAGAAGAAGCTTTAGTGACCGCCCTTCATGATAGAGGCG
TGGAAATTGTCATCGGGACTTATGCTAGTCACAAGGCTTATAAGTCTAGTTTCTTGGCCGGCAATCTCTACCAAGCCAAT
GTCGAATTTCTTTTGGATCTGGGACAAAAGTTTGGTGTTCGGGCAGAAATCTTGGGTCAGAAACAAAATGATAGTCTGGC
TCGCCTGTCAGCTCTTTTGGAAGCTCGGCGGGACTTCTCTAGTGAGCTGCCTGAGATTTCGGCAGCAGATAAGCAAGTCT
TAACTATCTGGGAGGTCGTCAACCAAAAGGAAGAGGTCGAAGAGCTGGCTCGCTCCATCCGCAGTCTCCTCAATAAAGGT
GTCCGTTACAAGGATATTTTGGTCTTGCTGGGAGACTTGGATGCCTATGAATTGCAGATTGGCAAGACCTTTTCCAAGTA
TGATATTCCCTACTATTTGGGTAAGCAAGAGGCCATGAGTCACCATCCTCTGGTCAATTTTGTCGAAAGTTTGGAGCGAA
TTAAACGTTATAATTTTCGTGCTGAGGATTTGCTTAACCTCCTAAAATCCGGCCTTTTCAAGGATTTGACTGATACTGAA
ATTGATAAATTCGAGCAGTATGTTAGGTATGCAGATATCAAGGGTCAGGCCAAGTTCAAGCAGGATTTCACAGCTAATAT
CCAGACTGGCGTCAATGAGGATGGTCAGGCTATTGAAAAATACGATTTGGCCGCTCTCAATCAGATCCGTCAAGTGGTCA
TGGAGCCCTTGTTAGAGCTTTTTTCAAGTCGGAGCCTGCTGGCTAAGAACCTCTTGACCAATAAATTTCTTCCTTTCCTA
GAAGCCATTGACTTACCAAACAATATGGCTAATCTGGCTAAAGGCAAATCAGAGGGTGTGCTTGAAAGAGAAGGGGAGGT
CTGGCAATCTTTTTGCGACCTTCTGAATGAAATTGAGGAAATTTTTGGTCAGACCAAATTGTCTCTAGATGATTTCCTGG
CCCTGTTGGGACAGGGCATGGCAGCCAGCACTTTCAAGTTGGTGCCAGCTACCTTGGATGTGGTCAATGTTAAGGACTAC
AAATTGATTGAGCCCCATTCCAGTTCCTATGTCTTTGCTATCGGTCTTACAGCCAGTAACTTTCCCCGCCTGAGTCAAAC
GACTGGCCTCTTAACAGATGAAGAGCGCCAGCAACTCAATGAAAGCTTGGCTAATCGGGATCTTCAGGGACATTTTGATT
TGTCCGGTCTGGAAGATGTTAAAAAGTTCCACTCGGTCATGATTTCTTTAGTGAATTCGGCGACTGAAAGGCTGATACTG
TCTGCACCGCAAATCTATGCTGACAATCAGGATCAGCTTTCTCCTTATCTGCAGGAACTGGTTGATCTTGGTTTTGAGCC
TGTTTTGAAACAAGCCCAGGGCTTTGGAGACAAGCCGAGTGATTTGGGAACCTACAAGGCCCTCTTATCAAGAATTATTG
AGGCCAATCAGCTTAATCAAAATGAGGATTTGGACAAGGCCCAGGCTACCTTCTGGGCGGTTATGGTTCGCCGTTTGCGG
CAAAAATTAGCCCAGGCCGATATCCATATTCCTACCATTAGTGATAACTTGTCGGTTGAGCCTCTTTCTCAGGAGTCTCT
GGATTTGCTCTACCCAGCTGACCAGCCTTTGAAGCTGTCAGCTTCCAGCCTGACAACCTTCTACAACAATCAATACGGCT
ATTTCTTGCAGAAGGTTTTGAATTTGCAAGAGGAGGACTCCATTCATCCTGATTTCCGTCACCACGGCATCTATCTCCAT
CGTGTTTTTGAACGTTTGATGACTAAGCTGGATGATGGTGCAGATTTTGACCAGATTTTGGATCAAACCTTGCTTCAAGT
CAAGCAGGAGGCCACCTTTAAGCAGCTCTATTCTTATGATCAAGAGGCCGTCTTTTCTCGGGAAATTCTTGAAGGAATTG
CCCAAGGTATGACACCGATTTTGCGCAACAATCCTCTGGTTCGGGTCTTGGACAAGGCCCAGGCTCGCCATTATTTGGGG
CAAGAGAATTGGCAAAAAACGTCGGCTGATCAAAAGGCCCTAGAGCTTGGTTTTAATTTGCAGCTGCCCTTGGACCAGGA
GCGTCAGTTAGAAATCCGTGGTCAAATTGATCGACTGGACCAATTGGTTGATTCCGACAGTTTGGGTGTGGTTGATTATA
AATCTGGTGACAAAAAATTTAGTCTGGAGGAGTTCTACAATGGTCTCAGTCCACAATTGTTGACCTATATCTTGGCCCTC
AAGGAATCCATGCCTATGGACTATCAGGCTGAGATTTTTGGGGCTGGTTATCTCCATCTGCAAAATCCTGAGCTCAAATT
TAGTGATGTAGCAAGCTTTGGCCAAAGTTTGGAAAAATTTACGAAGCTTTTTAAGTATCAAGGGCTCTATGTTAAGGAAA
TGGCCAGTCAATTGAAGCCCTATTTTAATACGAGTGCCGCTAGGATTTTTAGTCAGGAGGAAATCGCTTGGCTGCTGGAC
TATACCAAGGAACTCTACCGTCAGGCTGCCAAGACCATTCTGTCTGGTCACTTTGCTATCAATCCTTATACAGAGGACCG
CAGGACGGTTGAAGGGCAACAGTTTAAGACCATTACTGGCTTTGAAGCAGACCGCCATATGCGCTATGCCCGACAGATTA
CCAAGGCCAGTCGGGATCAGCTTTTAGAAAAAATGAAAGAGCAAGGAGGTGAAGCCTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(759-1064)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

41.417

99.011

0.41