Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AUF16_RS08270 Genome accession   NZ_CP024590
Coordinates   1667619..1668341 (+) Length   240 a.a.
NCBI ID   WP_016181294.1    Uniprot ID   A0A6I7ZIQ1
Organism   Enterococcus avium strain FDAARGOS_184     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662619..1673341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS08255 (AUF16_08260) - 1663122..1663628 (+) 507 WP_016181297.1 QueT transporter family protein -
  AUF16_RS08260 (AUF16_08265) treC 1663661..1665283 (-) 1623 WP_049218577.1 alpha,alpha-phosphotrehalase -
  AUF16_RS08265 (AUF16_08270) treP 1665300..1667246 (-) 1947 WP_049218580.1 PTS system trehalose-specific EIIBC component -
  AUF16_RS08270 (AUF16_08275) treR 1667619..1668341 (+) 723 WP_016181294.1 trehalose operon repressor Regulator
  AUF16_RS08275 (AUF16_08280) ccpA 1668391..1669395 (-) 1005 WP_016181293.1 catabolite control protein A -
  AUF16_RS08280 (AUF16_08285) - 1669591..1670691 (+) 1101 WP_016181292.1 M24 family metallopeptidase -
  AUF16_RS08285 (AUF16_08290) - 1670742..1671224 (-) 483 WP_016181291.1 helix-turn-helix domain-containing protein -
  AUF16_RS08290 (AUF16_08295) - 1671721..1672287 (-) 567 WP_016181290.1 YtxH domain-containing protein -
  AUF16_RS08295 (AUF16_08300) - 1672292..1672729 (-) 438 WP_016181289.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27698.62 Da        Isoelectric Point: 8.0271

>NTDB_id=254088 AUF16_RS08270 WP_016181294.1 1667619..1668341(+) (treR) [Enterococcus avium strain FDAARGOS_184]
MKNYEVIYQAIERGILKGVYEAGDFLPSENKLRQSYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYESSTEVVSLKKIVIDDKTAHVTGFEAGAVCWKLIRTRAIDQKKVILDKDILLTTIVPELDTEIAKDSIY
RYFENQLGLTISFAEKEITIDALTDEDRELLDLNQHDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=254088 AUF16_RS08270 WP_016181294.1 1667619..1668341(+) (treR) [Enterococcus avium strain FDAARGOS_184]
ATGAAAAACTATGAAGTAATTTATCAGGCGATTGAGCGAGGAATTCTAAAGGGTGTGTATGAAGCAGGAGATTTCCTACC
CAGCGAGAACAAACTACGGCAAAGCTATCATGTCTCTCGTGACACGATACGCAAAGCCTTATCTCTTTTAATGGCTAACG
GTTATATTCAGAAAATCCAAGGCAAGGGGTCACTTGTCTTGAAACGGGAGCAATTGCGATTTCCTGTATCAGGTCTGACC
AGCTACAAAGAATTGCAGAATTCTTATGGCTATGAAAGTAGTACCGAAGTTGTTAGTCTTAAAAAAATTGTGATTGATGA
TAAAACAGCCCATGTGACAGGCTTTGAAGCAGGCGCCGTTTGTTGGAAATTGATCCGTACGCGTGCCATTGATCAAAAGA
AAGTAATCCTCGACAAGGACATACTACTAACAACTATCGTACCAGAATTAGATACTGAAATTGCAAAAGACTCAATTTAT
CGCTATTTTGAAAACCAACTTGGATTGACTATTTCTTTCGCTGAAAAAGAAATTACGATTGATGCATTGACTGATGAAGA
TCGTGAACTGCTTGATCTCAATCAGCATGACATCAATATCGTTTCAGTAAAGAGCCGCGTTTTTACCAGCGATGCCCGTC
AGTTCCAATATACTGAAAGTCGTCATCAAGTGGATAAATTTCGTTTCTTTGATTTTGCTCGACGTCATCCTTCGACGATG
TAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7ZIQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

49.576

98.333

0.487

Multiple sequence alignment