Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AUF16_RS07210 Genome accession   NZ_CP024590
Coordinates   1449818..1451635 (-) Length   605 a.a.
NCBI ID   WP_049218981.1    Uniprot ID   -
Organism   Enterococcus avium strain FDAARGOS_184     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1444818..1456635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS07185 (AUF16_07185) - 1444927..1445592 (-) 666 WP_016181505.1 GTP pyrophosphokinase family protein -
  AUF16_RS07190 (AUF16_07190) - 1445797..1446384 (+) 588 WP_049218975.1 CYTH domain-containing protein -
  AUF16_RS07195 (AUF16_07195) - 1446401..1447048 (+) 648 WP_016181503.1 DsbA family protein -
  AUF16_RS07200 (AUF16_07200) - 1447081..1448259 (-) 1179 WP_049218977.1 class C sortase -
  AUF16_RS07205 (AUF16_07205) - 1448261..1449442 (-) 1182 WP_049218979.1 class C sortase -
  AUF16_RS07210 (AUF16_07210) pepF 1449818..1451635 (-) 1818 WP_049218981.1 oligoendopeptidase F Regulator
  AUF16_RS07215 (AUF16_07215) - 1451747..1452745 (-) 999 WP_049218983.1 competence protein CoiA -
  AUF16_RS07220 (AUF16_07220) - 1452853..1453497 (-) 645 WP_016181497.1 adaptor protein MecA -
  AUF16_RS07225 (AUF16_07225) spxA 1453735..1454133 (-) 399 WP_010739854.1 transcriptional regulator SpxA -
  AUF16_RS07230 (AUF16_07230) - 1454914..1455633 (+) 720 WP_049218986.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69516.05 Da        Isoelectric Point: 4.5789

>NTDB_id=254084 AUF16_RS07210 WP_049218981.1 1449818..1451635(-) (pepF) [Enterococcus avium strain FDAARGOS_184]
MSEAKQLPKRQEVPIELTWDLTKIFADDAAFEEKFQALSEELSEVDKIKGTLAQGATEFLTAIEYVLDIYRKAEVIYVYA
HLKNDEDTANTTNQALYARASSLIAQVSEAVSWFEPEMLELSDQEIWAFFEKESKLELYRHFVEQIISERAHILPAEQEA
LLAGASEIFGSSADTFSIMNNADLKFPVVKNDEGEDVQLTHGVYGQLLESTNRNVREQAFKSLYSVYHQFRNTFASTLST
HVKGHNYKAKIRGYGSAREAALSGNHIPEDVYETLTLVVNQYLPLLHRYVELRKELLGLDELHMYDLYTPLLAEAPVKFS
YEEAQAKALEALKPLGEEYLEVVKKAFAERWIDVVENQGKRSGAYSSGAYDTQPYILLNWHDRLDELYTLVHEMGHSVHS
YFTRHTQPYVYGDYSIFLAEIASTTNENLLTSYLLETEKDPKIRAYIINHYLDGFKGTIFRQTQFAEFEHFIHTEDAAGN
PLTSEHLSKFYGELNMKYYGPIVVNDEEIKDEWSRIPHFYYNYYVYQYATGFSAASALAKRIVEAEPDALEKYLTYLKSG
SSDYPIEVMKKAGVDMTQPTYIEDAMEIFAQRLDELEELVEVLKN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=254084 AUF16_RS07210 WP_049218981.1 1449818..1451635(-) (pepF) [Enterococcus avium strain FDAARGOS_184]
ATGAGTGAAGCAAAACAATTGCCCAAACGCCAAGAAGTTCCTATTGAGCTGACTTGGGACTTAACGAAAATTTTTGCAGA
TGATGCTGCTTTTGAGGAGAAATTCCAAGCCTTATCAGAGGAGCTATCCGAAGTTGATAAGATTAAGGGAACTTTGGCTC
AAGGTGCAACGGAATTTTTAACAGCGATTGAATATGTTTTAGATATTTATCGCAAGGCGGAGGTCATTTATGTATATGCA
CATCTAAAAAATGATGAAGATACTGCAAATACAACAAATCAAGCATTATATGCACGGGCTTCTAGCTTAATTGCACAGGT
TAGTGAAGCAGTCAGCTGGTTTGAGCCAGAAATGCTGGAGCTATCAGACCAAGAAATTTGGGCCTTTTTTGAGAAGGAAT
CCAAATTAGAGCTGTATCGCCATTTTGTTGAGCAGATCATTTCTGAGAGGGCACACATTTTACCAGCTGAACAAGAGGCG
CTGTTAGCTGGTGCTAGTGAGATTTTTGGTAGTTCTGCGGATACATTTTCTATTATGAACAATGCGGATCTGAAATTCCC
AGTTGTAAAAAATGACGAGGGTGAAGATGTTCAATTAACACATGGGGTTTATGGTCAATTATTAGAAAGTACGAACCGAA
ATGTTCGTGAACAAGCATTTAAATCCTTATATTCTGTTTATCATCAATTTCGTAACACCTTTGCTTCAACCTTGAGCACA
CATGTCAAAGGGCATAACTACAAGGCTAAGATCCGTGGATACGGCTCTGCTCGTGAAGCGGCTTTGAGCGGAAATCATAT
TCCAGAAGATGTATATGAAACATTGACTTTGGTGGTTAATCAGTATTTGCCGCTATTGCATCGATATGTTGAATTACGGA
AAGAGCTACTAGGATTAGATGAGCTGCATATGTATGATTTATATACTCCGCTTTTAGCAGAAGCGCCAGTCAAGTTTAGT
TACGAAGAAGCACAGGCTAAGGCACTTGAAGCCTTAAAGCCATTAGGTGAAGAATATCTAGAAGTTGTGAAGAAGGCTTT
TGCTGAACGCTGGATCGATGTGGTTGAAAATCAAGGTAAACGCAGTGGTGCGTATTCTTCTGGTGCTTATGATACGCAAC
CGTATATTCTTTTGAACTGGCATGATCGGCTAGATGAGCTTTATACGTTAGTTCATGAGATGGGACACAGTGTTCATAGT
TATTTCACCCGTCATACGCAGCCTTATGTTTACGGCGATTACTCGATCTTTTTAGCAGAGATTGCTTCAACAACCAATGA
AAATCTTTTAACTAGTTATCTATTAGAAACAGAAAAGGACCCAAAAATTCGTGCCTATATCATTAACCATTATTTAGATG
GATTTAAGGGAACCATTTTCCGCCAAACACAATTTGCGGAGTTTGAACACTTTATTCATACTGAAGATGCGGCTGGCAAT
CCATTGACCAGCGAACATCTAAGCAAATTCTATGGTGAATTGAATATGAAATACTATGGACCAATCGTTGTTAACGACGA
AGAAATCAAGGATGAATGGTCAAGAATCCCCCATTTTTACTATAATTATTATGTCTATCAGTATGCGACTGGCTTCTCGG
CAGCGAGTGCTTTAGCAAAACGTATTGTTGAGGCTGAACCAGACGCGTTAGAGAAATATTTGACCTACTTAAAATCGGGT
AGTAGTGATTATCCGATCGAGGTGATGAAAAAAGCCGGTGTTGATATGACCCAGCCAACCTATATCGAAGACGCGATGGA
AATCTTTGCTCAAAGGTTGGATGAGTTGGAAGAGCTTGTTGAAGTGTTGAAAAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.73

97.851

0.536

Multiple sequence alignment