Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DKG71_RS39425 Genome accession   NZ_CP029541
Coordinates   9052527..9053177 (-) Length   216 a.a.
NCBI ID   WP_018092548.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-S7GS2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9047527..9058177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS39400 (DKG71_39400) - 9047541..9048371 (-) 831 WP_018092543.1 alpha/beta fold hydrolase -
  DKG71_RS39405 (DKG71_39405) - 9048561..9049454 (+) 894 WP_109895100.1 RNA polymerase sigma-70 factor -
  DKG71_RS39410 (DKG71_39410) - 9049406..9050071 (-) 666 WP_109895102.1 aspartate/glutamate racemase family protein -
  DKG71_RS39415 (DKG71_39415) - 9050324..9051070 (+) 747 WP_093636360.1 GntR family transcriptional regulator -
  DKG71_RS39420 (DKG71_39420) - 9051268..9052440 (-) 1173 WP_109895104.1 ROK family transcriptional regulator -
  DKG71_RS39425 (DKG71_39425) vraR 9052527..9053177 (-) 651 WP_018092548.1 response regulator transcription factor Regulator
  DKG71_RS39430 (DKG71_39430) - 9053182..9054420 (-) 1239 WP_109895106.1 histidine kinase -
  DKG71_RS39435 (DKG71_39435) - 9054529..9055458 (+) 930 WP_109895108.1 ATP-binding cassette domain-containing protein -
  DKG71_RS39440 (DKG71_39440) - 9055463..9056197 (+) 735 WP_109895110.1 ABC transporter permease subunit -
  DKG71_RS39445 (DKG71_39445) - 9056246..9056683 (+) 438 WP_109895112.1 hypothetical protein -
  DKG71_RS39450 (DKG71_39450) - 9056680..9057696 (-) 1017 WP_109896763.1 PD40 domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23070.56 Da        Isoelectric Point: 5.1543

>NTDB_id=254045 DKG71_RS39425 WP_018092548.1 9052527..9053177(-) (vraR) [Streptomyces sp. NEAU-S7GS2]
MPISVLLVDDEPLVRAGLRAILEAQTDIEVAGEAGDGASVVPLARTLRPDVIAMDVRMPLLDGIEATRAVLRSVPGPPRI
LVVTTFEEDEYVYEALRAGADGFLLKRSRPAEIVHAVRLVAEGGSLLLPAALRTMAAGRRNDRARADFERAALTAREQQV
LRLMSRGLSNAEIADELVLGAETVKTHVSSVLGKLGARDRTQAVIAAYESGFVSPG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=254045 DKG71_RS39425 WP_018092548.1 9052527..9053177(-) (vraR) [Streptomyces sp. NEAU-S7GS2]
GTGCCGATTTCCGTACTCCTGGTCGACGACGAGCCGCTTGTCCGCGCGGGACTGCGCGCCATTCTGGAAGCGCAGACCGA
TATCGAGGTGGCGGGCGAGGCGGGCGACGGAGCGTCCGTCGTCCCGCTGGCGCGGACGCTCCGGCCCGATGTGATCGCCA
TGGACGTACGGATGCCGCTCCTGGACGGCATCGAGGCGACCCGCGCGGTGCTGCGCTCGGTGCCCGGGCCGCCCCGGATC
CTCGTCGTCACCACGTTCGAGGAGGACGAGTACGTCTACGAGGCGCTGCGCGCGGGCGCGGACGGCTTTCTGCTCAAGCG
CTCCCGGCCGGCCGAGATCGTGCACGCGGTGCGGCTCGTGGCCGAGGGCGGCTCGCTGCTGCTCCCCGCGGCGCTGCGCA
CCATGGCGGCCGGCCGCCGCAACGACCGCGCCCGGGCCGACTTCGAGCGGGCTGCGCTCACCGCACGGGAGCAGCAGGTG
CTGCGGCTGATGTCCCGTGGGCTGTCGAACGCGGAGATCGCCGACGAGCTGGTCCTGGGGGCCGAGACGGTGAAGACGCA
TGTCAGCTCGGTGCTGGGGAAGCTCGGGGCCAGGGACCGCACCCAGGCGGTGATCGCCGCGTACGAGTCCGGGTTCGTCT
CGCCCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412

Multiple sequence alignment