Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DKG71_RS24385 Genome accession   NZ_CP029541
Coordinates   5686053..5687954 (+) Length   633 a.a.
NCBI ID   WP_204166085.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-S7GS2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5681053..5692954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS24365 (DKG71_24365) - 5681538..5682239 (-) 702 WP_204165916.1 DUF2993 domain-containing protein -
  DKG71_RS24370 (DKG71_24370) - 5682426..5683742 (-) 1317 WP_109891812.1 hypothetical protein -
  DKG71_RS24375 (DKG71_24375) - 5683753..5683998 (-) 246 WP_018089808.1 MoaD/ThiS family protein -
  DKG71_RS24380 (DKG71_24380) rcrP 5684206..5685939 (+) 1734 WP_109891814.1 ABC transporter ATP-binding protein Regulator
  DKG71_RS24385 (DKG71_24385) rcrQ 5686053..5687954 (+) 1902 WP_204166085.1 ABC transporter ATP-binding protein Regulator
  DKG71_RS24390 (DKG71_24390) - 5688911..5689738 (+) 828 WP_018089805.1 response regulator transcription factor -
  DKG71_RS24395 (DKG71_24395) - 5689763..5690788 (+) 1026 WP_026169660.1 LacI family DNA-binding transcriptional regulator -
  DKG71_RS24400 (DKG71_24400) - 5690897..5691946 (+) 1050 WP_109891818.1 trypsin-like peptidase domain-containing protein -
  DKG71_RS24405 (DKG71_24405) - 5692062..5692799 (+) 738 WP_018089802.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 68274.64 Da        Isoelectric Point: 5.8327

>NTDB_id=254014 DKG71_RS24385 WP_204166085.1 5686053..5687954(+) (rcrQ) [Streptomyces sp. NEAU-S7GS2]
MGGQPTEKSMDFKGSGKRLLAQMRPERGIMSLALALGALSVALTVVGPKVLGHATDLIMSGIIGRQLPDGLTRAQAAEQL
RAHGQDGLADMIGTMPVVPGHGIDFGAVGQVLLWVTLIYVAASLFGFVQARIATRVVQRAVFRMREQVEEKLARLPLSYF
DKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVLAMMFWISPLLALVALITVPVSVVVATKVGKRAQPQFVQQ
WKTTGKLNAHIEEMYTGHSLVKVFGRQRESAELFREQNEALYAAGFKAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDATEQDPDPAQPARPERIEGRVEFEDVSFRYAPD
NPLIEDLSLAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSREELRAHIGMVLQDTWLFGGTIAE
NIAYGAPAGTPMDKIVAAARATHVDRFVRTLPDGYDTVLDDEGSNVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMENGAIVEQGPHDALLAANGAYARLYAAQFAEPVSETG

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=254014 DKG71_RS24385 WP_204166085.1 5686053..5687954(+) (rcrQ) [Streptomyces sp. NEAU-S7GS2]
ATGGGCGGCCAGCCCACCGAGAAGTCGATGGACTTCAAGGGCTCCGGCAAGCGCCTGCTGGCCCAGATGCGGCCGGAGCG
CGGCATCATGAGCCTCGCCCTGGCGCTGGGCGCGCTGAGCGTGGCACTGACGGTCGTCGGCCCCAAGGTCCTCGGCCACG
CCACCGACCTGATCATGTCCGGCATCATCGGCCGGCAGCTGCCCGACGGGCTCACCAGGGCCCAGGCCGCCGAACAGCTC
CGCGCCCACGGCCAGGACGGGCTCGCCGACATGATCGGCACGATGCCGGTCGTCCCCGGCCACGGCATCGACTTCGGCGC
CGTCGGCCAGGTCCTGCTCTGGGTCACCCTGATCTATGTGGCCGCCTCACTGTTCGGCTTCGTCCAGGCCAGGATCGCCA
CCCGGGTGGTCCAGCGGGCCGTCTTCCGGATGCGCGAACAGGTCGAGGAGAAGCTGGCCCGGCTGCCGCTGAGCTACTTC
GACAAGCAGCAGCGCGGCGAGGTCCTCTCCCGGGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCT
CAGCCAGATCGTCGCCTCGCTGCTGACCATCGTCGGCGTGCTCGCCATGATGTTCTGGATCTCCCCGCTGCTGGCCCTGG
TCGCCCTGATCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAG
TGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGCCA
GCGGGAGTCCGCCGAACTCTTCCGCGAACAGAACGAGGCCCTCTACGCCGCCGGCTTCAAGGCCCAGTTCATCTCCGGGA
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTGGCGGTGGTCGGCGGCCTCCGCGTCGCCTCC
GGGGCCCTGTCCATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTCGCCTC
GATGGCCAACCTCGTCCAGTCCGGTGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCACGGAGCAGGACCCCG
ACCCCGCACAGCCGGCCCGCCCCGAACGCATCGAGGGCCGGGTCGAGTTCGAGGACGTCTCCTTCCGCTACGCACCGGAC
AATCCACTCATCGAGGACCTCTCGCTGGCCGTCCACCCCGGCCAGACGGTGGCGATCGTCGGCCCGACCGGCGCCGGCAA
GACCACGCTCGTCAACCTCCTGATGCGCTTCTACGAGGTGAGCGGCGGCCGGATCACCCTCGACGGCGTCGATATCGCCG
CCATGTCACGTGAGGAGCTGCGCGCGCACATCGGCATGGTTCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCCGAG
AACATCGCCTACGGAGCCCCCGCGGGCACCCCGATGGACAAGATCGTGGCGGCGGCCAGGGCCACCCACGTCGACCGCTT
CGTGCGGACCCTGCCGGACGGCTACGACACGGTGCTCGACGACGAGGGCAGCAATGTCTCCGTCGGCGAGAAGCAGCTGA
TCACCATCGCCCGCGCGTTTCTCGCCGAGCCGGCGATCTTGGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAGGTACTCATCCAGCACGCGATGGCCCAGCTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTCTCCACGAT
TCGCGACGCGGACGTCATCCTCGTCATGGAAAACGGTGCGATCGTGGAGCAGGGGCCCCACGATGCGCTGTTGGCTGCCA
ACGGGGCGTATGCGCGGCTTTATGCCGCGCAGTTCGCGGAGCCCGTCTCGGAGACGGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(48-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.961

98.262

0.412