Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DKG71_RS24380 Genome accession   NZ_CP029541
Coordinates   5684206..5685939 (+) Length   577 a.a.
NCBI ID   WP_109891814.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-S7GS2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5679206..5690939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS24345 (DKG71_24345) - 5679351..5679638 (-) 288 WP_078518611.1 DUF3099 domain-containing protein -
  DKG71_RS24350 (DKG71_24350) - 5679828..5680115 (-) 288 WP_006603933.1 DUF1416 domain-containing protein -
  DKG71_RS24355 (DKG71_24355) - 5680158..5681003 (-) 846 WP_109891810.1 sulfurtransferase -
  DKG71_RS24365 (DKG71_24365) - 5681538..5682239 (-) 702 WP_204165916.1 DUF2993 domain-containing protein -
  DKG71_RS24370 (DKG71_24370) - 5682426..5683742 (-) 1317 WP_109891812.1 hypothetical protein -
  DKG71_RS24375 (DKG71_24375) - 5683753..5683998 (-) 246 WP_018089808.1 MoaD/ThiS family protein -
  DKG71_RS24380 (DKG71_24380) rcrP 5684206..5685939 (+) 1734 WP_109891814.1 ABC transporter ATP-binding protein Regulator
  DKG71_RS24385 (DKG71_24385) rcrQ 5686053..5687954 (+) 1902 WP_204166085.1 ABC transporter ATP-binding protein Regulator
  DKG71_RS24390 (DKG71_24390) - 5688911..5689738 (+) 828 WP_018089805.1 response regulator transcription factor -
  DKG71_RS24395 (DKG71_24395) - 5689763..5690788 (+) 1026 WP_026169660.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62970.32 Da        Isoelectric Point: 6.8484

>NTDB_id=254013 DKG71_RS24380 WP_109891814.1 5684206..5685939(+) (rcrP) [Streptomyces sp. NEAU-S7GS2]
MLVRLARAHLRPHRRSISLIVLLQLIQTLATLYLPTLNADIIDNGVVKGDTGYILRVGGYMVAVTLLQIVCAIGAVYFGA
RSAMALGRDIRAAVFDRVQSFSAREVGAFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGVIMALNQDVPLSGL
LLVIVPVLGILVSLIVRRMRPLFRGMQERIDTVNRVLREQITGIRVIRAFVRDRHERERFAGANTDLYDASLRAGRLMSM
MFPLVMLIVNVSSVAVVWFGGLRIDSGSMEIGALTAFLSYLMYILMSIMMATFMVMMLPRAEVCAERIQEVLATDSSVTP
PEHPVTELRRHGELELRGVEFRFPGAEQPVLRDISLTARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGTVLVDGEDVR
TLDQETLAKAIGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALETAQARDFVERMEGGLEAPIAQGGGNVSGGQRQRL
AIARALVRRPEIYLFDDSFSALDYATDAALRAALARETDRATVVIVAQRVSTIRGADRIVVLDEGRVVGTGTHAELMAGN
ETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=254013 DKG71_RS24380 WP_109891814.1 5684206..5685939(+) (rcrP) [Streptomyces sp. NEAU-S7GS2]
GTGTTGGTCCGACTAGCGCGGGCGCATCTGCGGCCCCACAGGCGCTCGATATCCCTGATCGTTCTGCTCCAGCTCATCCA
GACCCTGGCCACTCTCTACCTGCCCACCCTCAACGCCGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTCCGTGTCGGCGGCTACATGGTCGCCGTCACCCTGCTGCAGATCGTCTGCGCGATCGGTGCCGTCTACTTCGGCGCC
CGTAGCGCCATGGCGCTCGGCCGGGACATCCGCGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGGTGGG
CGCCTTCGGCGCGCCGTCGCTGATCACCCGGACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CGATGATGGTTTCGGCGCCGATCATGTGCGTCGGCGGCGTCATCATGGCGCTCAATCAGGATGTGCCGCTGTCCGGCCTG
CTCCTGGTCATCGTCCCGGTCCTCGGGATACTCGTCTCACTGATCGTGCGCCGGATGCGTCCGCTGTTCCGCGGGATGCA
GGAGCGCATCGACACCGTCAACCGCGTACTGCGCGAGCAGATCACCGGTATCCGCGTCATCCGCGCCTTCGTCCGCGACC
GGCACGAGCGCGAGCGGTTCGCCGGGGCCAACACCGATCTGTACGACGCGTCGCTGCGCGCCGGCCGGCTGATGTCGATG
ATGTTCCCGCTGGTCATGCTGATCGTGAACGTCTCCAGCGTGGCCGTCGTCTGGTTCGGCGGACTGCGCATCGACAGCGG
CTCCATGGAGATCGGCGCGCTGACCGCGTTCCTCAGCTACCTCATGTACATCCTGATGTCGATCATGATGGCGACGTTCA
TGGTGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGACTCCAGCGTCACCCCG
CCCGAGCACCCCGTCACCGAGCTCCGTCGCCACGGCGAACTGGAGCTGCGCGGTGTCGAGTTCCGCTTCCCGGGTGCCGA
GCAGCCCGTCCTCAGGGACATCTCGCTGACCGCCCGCCCCGGTGAGACCACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTCCTCGGGCTCGTCCCCCGCCTCTTCGACGCGACCGGCGGCACGGTCCTGGTGGACGGCGAGGACGTCCGC
ACCCTCGACCAGGAGACGCTGGCCAAGGCCATCGGCCTGGTCCCGCAGAAGCCCTATCTCTTCTCCGGCACCGTCGCCAC
CAACCTCCGTTACGGCAATCCGGACGCCACCGACGACGAGCTGTGGCACGCCCTGGAGACCGCCCAGGCGAGGGACTTCG
TCGAGCGGATGGAAGGCGGCCTGGAGGCCCCCATCGCGCAGGGCGGCGGCAATGTCTCCGGCGGCCAGCGCCAGCGGCTG
GCGATCGCCCGCGCCCTGGTGCGGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGCCGCCCTCGCCCGCGAGACCGACCGGGCCACGGTCGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GCGGCGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCACCCACGCCGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-287)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.073

95.147

0.381

Multiple sequence alignment