Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   CTI66_RS08470 Genome accession   NZ_CP024548
Coordinates   1783189..1783785 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KSB1_7J isolate KSB1_7J     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1778189..1788785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTI66_RS08450 (CTI66_17255) - 1778381..1780138 (-) 1758 WP_004191101.1 Lon protease family protein -
  CTI66_RS08455 (CTI66_17250) matP 1780324..1780776 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CTI66_RS08460 (CTI66_17245) ompA 1780908..1781978 (-) 1071 WP_002898408.1 porin OmpA -
  CTI66_RS08465 (CTI66_17240) sulA 1782331..1782840 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  CTI66_RS08470 (CTI66_17230) sxy/tfoX 1783189..1783785 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CTI66_RS08475 (CTI66_17225) yccS 1783799..1785934 (-) 2136 WP_002898422.1 YccS family putative transporter -
  CTI66_RS08480 (CTI66_17220) - 1785952..1786398 (-) 447 WP_002898425.1 YccF domain-containing protein -
  CTI66_RS08485 (CTI66_17215) helD 1786523..1788577 (+) 2055 WP_004176653.1 DNA helicase IV -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=253906 CTI66_RS08470 WP_004179217.1 1783189..1783785(+) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_7J isolate KSB1_7J]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=253906 CTI66_RS08470 WP_004179217.1 1783189..1783785(+) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_7J isolate KSB1_7J]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51


Multiple sequence alignment