Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DK182_RS00220 Genome accession   NZ_CP029491
Coordinates   30855..31610 (+) Length   251 a.a.
NCBI ID   WP_019786787.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25855..36610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS00200 (DK181_00200) mreD 26581..27084 (+) 504 WP_019770815.1 rod shape-determining protein MreD -
  DK182_RS00205 (DK181_00205) - 27175..28500 (+) 1326 WP_019777584.1 CHAP domain-containing protein -
  DK182_RS00210 (DK181_00210) - 28617..29585 (+) 969 WP_002959627.1 ribose-phosphate diphosphokinase -
  DK182_RS00215 (DK181_00215) - 29690..30865 (+) 1176 WP_019768933.1 pyridoxal phosphate-dependent aminotransferase -
  DK182_RS00220 (DK181_00220) recO 30855..31610 (+) 756 WP_019786787.1 DNA repair protein RecO Machinery gene
  DK182_RS00225 (DK181_00225) plsX 31839..32837 (+) 999 WP_019768931.1 phosphate acyltransferase PlsX -
  DK182_RS00230 (DK181_00230) - 32940..33185 (+) 246 WP_002959619.1 acyl carrier protein -
  DK182_RS00235 (DK181_00235) - 33752..33886 (+) 135 WP_255264604.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DK182_RS10735 - 33916..34044 (+) 129 WP_019768929.1 hypothetical protein -
  DK182_RS10485 - 34099..34242 (+) 144 WP_019785178.1 hypothetical protein -
  DK182_RS00240 (DK181_00240) - 34504..35325 (+) 822 WP_109833384.1 ABC transporter ATP-binding protein -
  DK182_RS00245 (DK181_00245) - 35315..36034 (+) 720 WP_109833385.1 hypothetical protein -
  DK182_RS10740 - 36276..36404 (+) 129 WP_019768926.1 hypothetical protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29248.69 Da        Isoelectric Point: 6.4945

>NTDB_id=253795 DK182_RS00220 WP_019786787.1 30855..31610(+) (recO) [Streptococcus sobrinus strain 10919]
MQTKESRGLVLFNRNYREDDKLVKIFTETAGKRMFFVKHISHSKLASVIQPLTLADFLMKINDSGLSYIDDVKEVQTFKT
INADIFRLSYASYIVALADAAIEDGRHDVPLFAFLVKTLELMEQGLDYEILTNIFEIQILDRFGIQLNFHDCALCHCAGL
PFDFSYKYSGLLCPQHYEKDSYRSHLDPNVPYLLDRFQSISFEDLQTISVKPEMKQRLRRFIDGIYDNYLGLHLRSKKFI
DDLSKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=253795 DK182_RS00220 WP_019786787.1 30855..31610(+) (recO) [Streptococcus sobrinus strain 10919]
ATGCAGACTAAGGAATCACGTGGTCTGGTCCTCTTTAACCGCAACTATCGTGAGGATGATAAGCTGGTTAAGATCTTTAC
AGAGACAGCAGGCAAACGAATGTTTTTCGTGAAACATATCAGCCACTCTAAGTTGGCATCAGTCATCCAGCCCTTGACCC
TTGCGGATTTTCTCATGAAAATCAATGATTCTGGGCTTTCTTATATTGATGATGTTAAGGAGGTCCAGACCTTCAAGACC
ATCAATGCGGATATTTTTCGCTTATCCTATGCCTCTTATATCGTTGCTCTGGCGGACGCTGCTATTGAAGATGGTCGTCA
TGACGTTCCCCTTTTTGCCTTCTTGGTTAAAACTTTAGAATTGATGGAGCAGGGGTTGGATTATGAGATTTTGACCAATA
TTTTTGAAATTCAAATTTTGGACCGCTTTGGGATTCAATTGAATTTTCATGACTGTGCTCTTTGTCACTGCGCTGGTCTT
CCTTTTGATTTTTCTTACAAGTATTCGGGACTTCTCTGTCCACAACACTATGAAAAAGATAGCTATCGCAGTCATTTGGA
TCCCAATGTTCCTTATCTTCTAGATCGTTTTCAATCGATTTCTTTTGAGGATTTACAGACGATTTCAGTCAAACCTGAGA
TGAAGCAGAGGTTGCGGAGATTTATTGATGGTATTTATGATAATTATCTCGGCCTACATTTGAGGTCCAAAAAATTTATT
GATGACTTGTCTAAATGGGGAGATATTATGAAATAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.143

100

0.641

Multiple sequence alignment