Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DK181_RS07350 Genome accession   NZ_CP029490
Coordinates   1518693..1520348 (-) Length   551 a.a.
NCBI ID   WP_002963098.1    Uniprot ID   A0ABM6W6G8
Organism   Streptococcus sobrinus strain SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1513693..1525348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS07330 (DK182_07330) argJ 1514313..1515506 (-) 1194 WP_002959655.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  DK181_RS07335 (DK182_07335) argC 1515580..1516602 (-) 1023 WP_002959656.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DK181_RS07340 (DK182_07340) - 1516847..1517371 (-) 525 WP_002959657.1 DUF6287 domain-containing protein -
  DK181_RS07345 (DK182_07345) - 1517666..1518616 (+) 951 Protein_1395 IS30 family transposase -
  DK181_RS07350 (DK182_07350) recN 1518693..1520348 (-) 1656 WP_002963098.1 DNA repair protein RecN Machinery gene
  DK181_RS07355 (DK182_07355) - 1520362..1520832 (-) 471 WP_002963099.1 arginine repressor -
  DK181_RS07360 (DK182_07360) - 1520819..1521646 (-) 828 WP_002963100.1 TlyA family RNA methyltransferase -
  DK181_RS07365 (DK182_07365) - 1521639..1522505 (-) 867 WP_002963101.1 polyprenyl synthetase family protein -
  DK181_RS07370 (DK182_07370) - 1522498..1522722 (-) 225 WP_002963102.1 exodeoxyribonuclease VII small subunit -
  DK181_RS07375 (DK182_07375) xseA 1522697..1524040 (-) 1344 WP_028798545.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 551 a.a.        Molecular weight: 62030.81 Da        Isoelectric Point: 4.5813

>NTDB_id=253759 DK181_RS07350 WP_002963098.1 1518693..1520348(-) (recN) [Streptococcus sobrinus strain SL1]
MLLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARSSTEVIRHGAPKAEIQGFFTVEKSPALSQVL
EEHGIDFRDELIIRREIFQNGRSVSRINGQMVNLSTLRSVGQYLVDIHGQHDQEELMKAPQHIKLLDEFGDEEFQAIKST
YQTTFDAYRSLRKRVIDKQKNEQEHKARIEMLEFQLAEIEAADLKPGEDDQLNQERDKLLNHKNIADTLTNAYTMLDNED
FSSLANVRSAMNDLQTIEDFDPDYKEVATGLAESYYVLEDASKRLSDIIDNLDFDGNRLNVIDDRLNVINTITRKYGGKV
DDVLDYFATISKEYDHLTGNDLDSDDLEGQLKALEKELLTSSQVLSDKRHDLAQILEKEIKHELTDLYMEKADFQVQFSK
AKFSHEGNEHVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAAADYQFFIEKESKDDSTVSTVRLLTAEERVEEIAKMLAGDQVTQAALSQAEELLK

Nucleotide


Download         Length: 1656 bp        

>NTDB_id=253759 DK181_RS07350 WP_002963098.1 1518693..1520348(-) (recN) [Streptococcus sobrinus strain SL1]
ATGTTATTAGAAATTTCCATTAAGAATTTTGCCATCATTGAAGAAATTTCTCTCAATTTTGAAAAAGGAATGACGGTCCT
GACCGGGGAAACCGGTGCCGGGAAATCCATCATTATTGATGCCATGAATATGATGCTTGGGGCAAGGTCTAGTACCGAGG
TAATTCGTCACGGAGCCCCCAAGGCAGAAATTCAGGGCTTTTTCACGGTGGAAAAAAGTCCTGCCCTCAGCCAGGTCCTT
GAAGAACATGGGATTGATTTTAGAGATGAGCTGATTATCCGCCGAGAAATTTTTCAAAATGGTCGCAGTGTCAGCCGTAT
CAATGGCCAGATGGTCAACCTTTCCACCCTCCGCTCGGTCGGCCAGTACCTGGTGGATATTCACGGCCAGCATGACCAGG
AAGAATTGATGAAGGCTCCTCAACACATCAAGCTTCTAGATGAGTTTGGTGATGAAGAATTTCAAGCCATCAAGTCAACC
TATCAAACCACCTTTGATGCCTACCGCAGCCTTCGTAAACGTGTTATTGACAAGCAGAAAAATGAGCAGGAACATAAGGC
ACGGATTGAGATGCTGGAATTTCAGCTGGCCGAGATTGAAGCGGCTGACCTCAAGCCTGGGGAAGACGATCAGCTCAATC
AAGAGCGGGATAAATTACTGAACCACAAGAATATTGCGGATACACTGACCAATGCTTATACCATGCTGGACAATGAAGAT
TTTTCCAGTCTAGCCAATGTTCGCTCAGCCATGAATGACCTCCAGACCATTGAGGACTTTGACCCAGACTATAAAGAGGT
CGCGACCGGTCTAGCTGAAAGCTACTATGTCTTGGAGGATGCCAGCAAGCGTCTATCCGATATTATCGACAATCTTGATT
TTGATGGCAATCGTCTCAATGTCATTGATGACCGTCTCAATGTTATCAATACCATTACCCGAAAGTACGGGGGCAAGGTT
GATGATGTCTTGGATTACTTTGCGACTATCAGCAAGGAATATGATCATCTGACTGGTAACGACTTAGACTCCGATGATTT
AGAGGGTCAGCTCAAGGCTCTGGAAAAGGAACTGCTGACTTCTAGTCAGGTCTTGTCTGATAAAAGACATGACCTAGCTC
AGATTCTAGAAAAAGAGATTAAGCATGAGTTGACAGACCTTTACATGGAAAAGGCTGACTTCCAAGTTCAGTTTAGTAAG
GCAAAGTTTAGCCATGAAGGCAATGAGCATGTCGAGTTTTACATTTCAACCAACCCTGGAGAAGGCTTTAAACCGCTGGT
TAAGGTAGCTTCTGGTGGAGAATTGTCCCGGCTTATGTTGGCCATCAAATCAGCCTTTGCCCGCAAGGAAGACAAGACCT
CTATCGTCTTCGACGAGGTTGACACGGGCGTGTCCGGCCGGGTTGCTCAGGCTATTGCCCAGAAGATTCATAAGATTGGT
AGTCATGGTCAAGTCTTGGCCATTTCTCACCTGCCCCAAGTGATTGCCGCAGCTGACTATCAATTCTTTATTGAAAAGGA
AAGCAAGGATGACTCGACAGTTTCAACTGTCCGTCTCCTAACCGCAGAAGAAAGAGTAGAGGAGATCGCCAAAATGTTAG
CTGGTGATCAGGTCACTCAGGCAGCATTAAGCCAGGCCGAAGAACTTTTAAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.246

100

0.466