Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DK181_RS06895 Genome accession   NZ_CP029490
Coordinates   1421886..1424123 (-) Length   745 a.a.
NCBI ID   WP_002962355.1    Uniprot ID   A0ABN5LTH9
Organism   Streptococcus sobrinus strain SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1416886..1429123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS06875 (DK182_06875) - 1417930..1418913 (-) 984 WP_002962348.1 YihY/virulence factor BrkB family protein -
  DK181_RS06880 (DK182_06880) - 1418918..1419778 (-) 861 WP_002962350.1 methionyl aminopeptidase -
  DK181_RS06885 (DK182_06885) spxR 1419858..1421138 (-) 1281 WP_002962351.1 CBS-HotDog domain-containing transcription factor SpxR -
  DK181_RS06890 (DK182_06890) - 1421135..1421683 (-) 549 WP_002962353.1 GNAT family N-acetyltransferase -
  DK181_RS06895 (DK182_06895) recJ 1421886..1424123 (-) 2238 WP_002962355.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DK181_RS06900 (DK182_06900) - 1424120..1424893 (-) 774 WP_019781377.1 SDR family NAD(P)-dependent oxidoreductase -
  DK181_RS06905 (DK182_06905) rnz 1424890..1425819 (-) 930 WP_002962358.1 ribonuclease Z -
  DK181_RS06910 (DK182_06910) - 1425875..1426528 (-) 654 WP_002962359.1 hypothetical protein -
  DK181_RS06915 (DK182_06915) hflX 1426521..1427759 (-) 1239 WP_028798414.1 GTPase HflX -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 82429.85 Da        Isoelectric Point: 4.4247

>NTDB_id=253756 DK181_RS06895 WP_002962355.1 1421886..1424123(-) (recJ) [Streptococcus sobrinus strain SL1]
MISSKFDWKQVDQAPSEPFLELAKKENLDNLAAGILYERGIDDQAKLHDFLSADLSQLHDPYLLHDMDKAVERIRSAIEA
GQQILIYGDYDADGMTSSSIMQEALEMLGAEYQVYLPNRFTDGYGPNLSVYKYFIEQQETSLIVTVDNGVAGHEAIAYAQ
EQGIDVVVTDHHSLPDNLPDAYAIVHPEHPEGDYPFKYLAGCGVAFKLASALLEGIPNELLDLVAIGTIADMVSLTGENR
ILVKYGLQMLAQTERVGLQELMQLADIEPSDLNEETVGFKIAPMLNALGRLDDPNPAVELLTGFDDQEAGEIAHMIQEKN
EERKQIVQDIYDQALTMIAPGKPAQVLAKEGWHPGVLGIVAGRISESLSQPVILLNIEDGRAKGSARSVEAVNIFAALNP
HRDIFDAFGGHAGAAGMTLPVENLEKLSDALCSYILDNGLDKAGKNSLTIDEELHLPDLSLETIKSLEKLSPFGMDNKKP
VFLLKDFQVLQSRTMGQNGAHLKLKLAQAGAEFDLVAFSQGHLAQEFAQASGLELAVTLSVNKWNGNTSLQLMLVDARVQ
GVQLIDIRAKSAQLPKGVPSLQQLVEADKQAQAVVLLKVPEQASQLKEAFQDQDFSAIYFKNQIKQAYYLTGYGTREQFA
KLYKTIYQFPEFDIRHKLKELADYLKIPDILLIKMIQIFEELDFVTIADGIMTVNKSADKKPISDSQIYQDLVALVKYQE
LMALGSPREIYDWLTGASKNNEQEF

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=253756 DK181_RS06895 WP_002962355.1 1421886..1424123(-) (recJ) [Streptococcus sobrinus strain SL1]
ATGATTTCTTCTAAGTTTGATTGGAAACAAGTTGACCAGGCTCCTAGTGAGCCCTTTTTAGAGCTGGCAAAAAAAGAAAA
TTTGGATAACCTGGCAGCCGGTATTCTCTATGAAAGGGGAATTGATGACCAGGCCAAGCTCCATGATTTTCTGTCAGCTG
ACCTGTCCCAACTCCATGATCCTTATTTACTTCATGATATGGATAAGGCTGTCGAGCGGATTCGTTCTGCCATTGAAGCT
GGCCAGCAAATCCTAATCTACGGGGACTACGATGCCGATGGCATGACCTCCAGCTCTATTATGCAGGAGGCCCTGGAGAT
GTTGGGGGCTGAGTATCAGGTTTATCTGCCCAATCGGTTTACCGATGGTTATGGGCCCAATCTCAGCGTTTATAAGTACT
TTATTGAGCAGCAGGAAACCTCTCTGATTGTGACCGTTGATAATGGGGTGGCTGGTCATGAGGCCATTGCCTATGCACAG
GAGCAGGGGATTGATGTCGTCGTTACCGACCACCATTCCCTGCCGGATAATCTGCCCGATGCTTACGCTATTGTTCACCC
CGAGCATCCAGAAGGAGACTATCCCTTTAAATATCTGGCCGGCTGTGGTGTGGCCTTCAAACTAGCCTCTGCCCTCTTGG
AAGGTATTCCCAATGAGTTACTGGACCTGGTCGCTATCGGAACCATTGCCGATATGGTTAGCCTGACTGGGGAAAATCGG
ATTCTGGTCAAGTATGGCCTGCAAATGCTGGCTCAGACTGAAAGGGTGGGCCTGCAGGAACTCATGCAGCTGGCTGATAT
TGAGCCTAGCGACCTCAATGAGGAAACCGTTGGCTTCAAGATTGCCCCCATGCTCAATGCCCTAGGTCGCCTAGATGACC
CCAACCCTGCTGTCGAACTCCTGACCGGCTTTGATGACCAAGAGGCTGGCGAAATTGCTCACATGATTCAGGAGAAAAAT
GAGGAACGCAAGCAGATTGTTCAGGATATCTATGACCAGGCCCTGACCATGATTGCCCCTGGCAAACCGGCCCAGGTCTT
AGCCAAGGAAGGCTGGCATCCTGGGGTCCTGGGCATTGTGGCTGGTCGGATTTCGGAATCTCTCAGTCAGCCTGTTATCC
TCCTCAATATTGAAGACGGCAGGGCCAAGGGGTCGGCCCGCTCGGTTGAGGCTGTCAATATCTTTGCTGCCCTCAATCCT
CATCGGGACATTTTCGATGCCTTTGGTGGCCATGCTGGTGCGGCTGGTATGACCCTGCCGGTTGAAAATCTGGAAAAGCT
ATCTGATGCTCTCTGTAGCTATATCCTAGATAATGGTCTAGATAAGGCTGGCAAGAATAGCCTGACCATTGATGAGGAGC
TTCACTTGCCCGACCTGTCTCTGGAGACCATCAAGAGCCTAGAAAAGCTGTCTCCCTTTGGCATGGATAATAAGAAACCG
GTATTTCTTCTCAAGGATTTCCAGGTCCTGCAAAGCCGAACTATGGGACAAAATGGAGCCCACCTCAAACTCAAACTGGC
CCAAGCTGGTGCAGAATTCGATCTGGTAGCCTTCTCCCAAGGCCATCTGGCCCAAGAATTTGCTCAGGCCAGCGGTCTCG
AGCTGGCGGTGACCCTCTCAGTCAATAAATGGAACGGTAATACCAGTCTTCAGCTTATGCTGGTTGATGCTCGAGTGCAA
GGGGTGCAACTCATTGATATTAGGGCTAAATCGGCCCAGTTACCTAAGGGTGTGCCCAGCCTCCAGCAGCTAGTAGAAGC
TGATAAGCAGGCTCAAGCTGTTGTCCTCCTAAAGGTTCCAGAGCAAGCTAGCCAACTCAAAGAGGCCTTCCAAGATCAGG
ATTTTTCAGCCATCTATTTTAAAAATCAGATTAAGCAGGCCTATTATCTGACTGGCTACGGAACTCGAGAGCAGTTTGCC
AAACTTTACAAGACCATCTATCAATTTCCAGAATTTGATATCCGTCATAAGCTCAAAGAACTGGCAGACTATCTCAAAAT
CCCTGATATTCTCTTAATTAAGATGATTCAGATTTTTGAGGAATTGGACTTCGTGACCATTGCTGATGGTATCATGACGG
TCAATAAGTCTGCCGACAAGAAGCCTATCTCCGACAGCCAAATTTATCAGGATTTGGTGGCCCTGGTCAAGTACCAAGAA
CTCATGGCCCTCGGAAGCCCCAGAGAAATCTATGACTGGCTGACGGGTGCTTCAAAAAATAACGAGCAGGAATTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(587-734)

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.935

98.792

0.671
  recJ Bacillus subtilis subsp. subtilis str. 168

36.271

100

0.381