Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DK181_RS04980 Genome accession   NZ_CP029490
Coordinates   1040321..1042072 (+) Length   583 a.a.
NCBI ID   WP_028798405.1    Uniprot ID   A0ABN5LLR4
Organism   Streptococcus sobrinus strain SL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035321..1047072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS04965 (DK182_04965) - 1035661..1037547 (+) 1887 WP_002962561.1 ABC-F family ATP-binding cassette domain-containing protein -
  DK181_RS10925 - 1037611..1037994 (+) 384 Protein_933 hypothetical protein -
  DK181_RS04975 (DK182_04975) rcrP 1038335..1040071 (+) 1737 WP_002962563.1 ABC transporter ATP-binding protein Regulator
  DK181_RS04980 (DK182_04980) rcrQ 1040321..1042072 (+) 1752 WP_028798405.1 ABC transporter ATP-binding protein Regulator
  DK181_RS04985 (DK182_04985) - 1042240..1043004 (-) 765 WP_002963402.1 NUDIX domain-containing protein -
  DK181_RS04990 (DK182_04990) pnuC 1043001..1043822 (-) 822 Protein_937 nicotinamide riboside transporter PnuC -
  DK181_RS04995 (DK182_04995) - 1043838..1044944 (-) 1107 WP_032798528.1 AAA family ATPase -
  DK181_RS05000 (DK182_05000) - 1045644..1046153 (-) 510 WP_002963409.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 65216.49 Da        Isoelectric Point: 6.2797

>NTDB_id=253743 DK181_RS04980 WP_028798405.1 1040321..1042072(+) (rcrQ) [Streptococcus sobrinus strain SL1]
MSKNVFLRLWDYLKHYQGTLYLAVFLKIVAAVASVIEPFILGLMVTELTSSLMAGRPIDGQKILFLIIVYIIRGLLSEIG
SYGSNFFMTRTVQRSIHDLRHDLSHKINKIPVSYFDKHKFGDMLGRFTSDVETVSNALQQSFLQVINAVLTLIMVVAMVL
YLNIQLGLFVIATIPITYFSASYLLKKSQPYFKRQADVLGDMNGFVQENLTGFNVIKLYGREEASAKEFDGILDELQEVG
FKASFISGIMMPILNAISDSSYLIIAVWGGLKVIAGKLTIGNLQAFVQYLWQIGQPIQTLTQLASMLQSARSSLERIFAV
LDEDNEVAEVTEHLSHDLTGQVSFNHVDFQYVEGKPLIRDFNLDVKPGQMIAIVGPTGAGKTTLINLLMRFYDVTKGAIT
VDGHDIRHLSRQDYRRQFGMVLQDAWLYEGSIKDNLRFAKLDATDEEIIAAAKAANVDHSIRTLPGGYNMEMNQESSNIS
LGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMSRLMEGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGTH
DSLLADKGFYHDLYMSQFSDQAG

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=253743 DK181_RS04980 WP_028798405.1 1040321..1042072(+) (rcrQ) [Streptococcus sobrinus strain SL1]
ATGTCAAAAAATGTCTTTTTACGTCTCTGGGACTATCTCAAACATTATCAAGGCACCCTCTATCTAGCAGTCTTTCTCAA
GATAGTCGCAGCAGTAGCTAGTGTTATCGAGCCCTTTATTTTGGGCCTTATGGTGACCGAATTGACCTCCAGCCTTATGG
CTGGACGGCCTATTGATGGACAGAAGATTCTCTTTTTGATTATTGTCTATATCATTCGCGGGTTGCTTTCTGAGATTGGT
AGTTACGGTTCCAACTTTTTCATGACTAGGACGGTGCAACGCTCCATTCACGATTTGCGGCACGACCTCAGTCATAAAAT
CAATAAGATACCCGTTTCTTACTTTGATAAGCATAAATTCGGTGACATGCTGGGCCGTTTTACCAGCGACGTCGAAACGG
TTTCCAATGCCCTGCAACAATCCTTCCTCCAGGTTATCAATGCAGTTTTGACCCTGATTATGGTTGTTGCCATGGTTCTC
TACCTCAATATCCAGCTGGGACTCTTTGTCATCGCAACTATTCCCATCACCTATTTTTCGGCTTCTTATTTGCTTAAGAA
ATCTCAGCCCTATTTCAAACGTCAGGCTGACGTTCTGGGAGATATGAATGGCTTTGTTCAGGAAAATCTGACCGGTTTCA
ATGTCATCAAGCTCTACGGTCGTGAAGAAGCTTCCGCCAAGGAATTTGACGGTATCCTCGATGAATTACAGGAGGTCGGT
TTCAAGGCCAGCTTTATTTCCGGTATCATGATGCCTATTCTCAATGCCATCTCGGATTCCTCCTACCTGATTATTGCGGT
CTGGGGCGGACTCAAGGTTATCGCAGGTAAGTTGACGATTGGTAATCTCCAGGCCTTTGTTCAATATCTCTGGCAGATTG
GTCAACCTATCCAAACCCTGACCCAGCTTGCCTCCATGCTCCAGTCGGCTCGCTCATCTCTAGAACGGATTTTTGCCGTT
CTTGATGAGGATAATGAAGTGGCAGAAGTGACCGAGCACCTTTCTCATGACCTGACTGGACAAGTTTCCTTCAATCATGT
GGATTTCCAATATGTGGAAGGTAAGCCACTGATTCGGGACTTCAATTTGGATGTCAAGCCTGGCCAAATGATTGCCATCG
TCGGTCCAACGGGAGCTGGTAAGACAACCTTGATTAATCTCCTCATGCGGTTCTACGATGTTACCAAGGGAGCCATTACG
GTGGATGGCCACGATATTCGCCACCTGTCTCGTCAGGACTATCGCAGACAGTTCGGCATGGTGCTCCAGGATGCCTGGCT
CTACGAAGGAAGCATCAAGGACAATCTTCGTTTTGCTAAACTGGATGCGACCGATGAAGAAATCATTGCCGCAGCCAAGG
CAGCCAATGTTGACCACTCTATCCGCACCCTGCCAGGTGGCTACAATATGGAAATGAATCAGGAATCCAGCAACATCTCC
TTGGGTCAAAAGCAGCTTCTGACCATTGCTAGGGCCCTCTTGGCTGACCCTAAGATTTTGATTTTGGATGAAGCAACCTC
CTCGGTTGATACCAGGTTGGAACTCTTGATACAAAAGGCCATGAGTCGACTGATGGAAGGTCGGACCAGCTTTGTCATTG
CCCACCGCCTCTCCACCATTCAAGAGGCTGATAAAATTCTCGTCCTCAAGGATGGTCAAATCATTGAGCAGGGCACCCAC
GACAGTCTCTTGGCTGACAAAGGTTTCTACCACGACCTCTATATGAGCCAGTTTAGTGACCAAGCGGGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.568

100

0.436