Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DK181_RS04975 Genome accession   NZ_CP029490
Coordinates   1038335..1040071 (+) Length   578 a.a.
NCBI ID   WP_002962563.1    Uniprot ID   A0ABN5LI70
Organism   Streptococcus sobrinus strain SL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033335..1045071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS04955 (DK182_04955) dapB 1033590..1034357 (+) 768 WP_019769096.1 4-hydroxy-tetrahydrodipicolinate reductase -
  DK181_RS04960 (DK182_04960) - 1034354..1035559 (+) 1206 WP_002962560.1 CCA tRNA nucleotidyltransferase -
  DK181_RS04965 (DK182_04965) - 1035661..1037547 (+) 1887 WP_002962561.1 ABC-F family ATP-binding cassette domain-containing protein -
  DK181_RS10925 - 1037611..1037994 (+) 384 Protein_933 hypothetical protein -
  DK181_RS04975 (DK182_04975) rcrP 1038335..1040071 (+) 1737 WP_002962563.1 ABC transporter ATP-binding protein Regulator
  DK181_RS04980 (DK182_04980) rcrQ 1040321..1042072 (+) 1752 WP_028798405.1 ABC transporter ATP-binding protein Regulator
  DK181_RS04985 (DK182_04985) - 1042240..1043004 (-) 765 WP_002963402.1 NUDIX domain-containing protein -
  DK181_RS04990 (DK182_04990) pnuC 1043001..1043822 (-) 822 Protein_937 nicotinamide riboside transporter PnuC -
  DK181_RS04995 (DK182_04995) - 1043838..1044944 (-) 1107 WP_032798528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64850.38 Da        Isoelectric Point: 7.0805

>NTDB_id=253742 DK181_RS04975 WP_002962563.1 1038335..1040071(+) (rcrP) [Streptococcus sobrinus strain SL1]
MNLIWSYLKKYPKWLVYDLLGALLFVVVNLGLPTVLARMIDQAINPKDKQALTFWALIMLAVVILGIIGRITLAYATGKL
STNMVRDLRRDMYAKLQDYSHEEYEKIGVSSLVTRMTNDAFVLMQFTEMSLRMGVVTPLMMAFSVIMILMTSPSLAWVVA
VFMPFLIATIAYVAIKTRPLSERQQKTLDKINQYVRENLTGLRVIRAFARESFQEERFDKKNQVYASISTRLFTLTGLTE
PMFIQIIVAMIVAIVWFALEPLNKGNLQIGDLVAFIEYSFHALFSFLIFANLFNMYPRMVVSSRRINAVMNMPLSISQNP
DGVTETASRGYLEFDHVTFAYPGETESPVLHDISFKAGPGQTTAFIGSTGSGKSSLVSLIPRFYDVTLGKILVDGVDVRD
YNLKALRQKVGFVPQKALLFTGSIEENLKYGKSDADIEELDQAASVAQAKEFIDSREEGYATHLAEGGSNLSGGQKQRLA
IARAVVKKPDIYIFDDSFSALDYRTDAQLRKRLKEVTQDATVLIVAQRVGTIMDADQIIVLDEGQIVGRGTHEELMKTND
IYREIADSQLKSGKLLED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=253742 DK181_RS04975 WP_002962563.1 1038335..1040071(+) (rcrP) [Streptococcus sobrinus strain SL1]
ATGAACCTTATTTGGTCTTATTTGAAAAAGTATCCCAAGTGGTTGGTTTATGATCTCTTAGGGGCCCTCTTATTTGTGGT
GGTCAATCTTGGTCTACCGACGGTCTTGGCACGGATGATCGACCAGGCTATCAATCCCAAGGACAAGCAGGCCTTGACCT
TCTGGGCCTTGATTATGTTGGCTGTTGTCATCTTAGGGATTATTGGCCGTATAACCCTGGCCTATGCAACTGGGAAATTG
TCCACCAATATGGTCCGAGATCTGCGGCGGGATATGTATGCTAAGTTGCAGGACTATTCCCACGAGGAATATGAGAAAAT
CGGTGTTTCGTCGCTGGTAACACGGATGACTAATGATGCCTTTGTTCTCATGCAGTTCACCGAAATGAGTTTGCGAATGG
GAGTGGTGACCCCGCTCATGATGGCCTTTTCAGTCATCATGATCTTAATGACCAGTCCTTCCTTAGCCTGGGTCGTGGCA
GTTTTTATGCCCTTCTTGATTGCGACTATTGCTTATGTAGCCATTAAGACAAGGCCCTTATCAGAACGGCAACAAAAGAC
CCTGGACAAGATTAACCAGTATGTCCGAGAAAATCTGACTGGACTTCGGGTTATTCGGGCCTTTGCACGGGAATCATTCC
AGGAAGAGCGCTTTGATAAAAAAAATCAGGTCTATGCTAGTATTTCAACTCGACTTTTCACTTTGACTGGTCTGACTGAA
CCCATGTTTATCCAGATTATTGTGGCTATGATTGTGGCTATTGTCTGGTTTGCTCTTGAGCCCCTCAATAAGGGCAACCT
GCAAATTGGGGATTTGGTGGCCTTCATTGAATACAGCTTCCATGCTCTCTTTTCCTTCCTGATTTTCGCCAATCTCTTTA
ATATGTACCCAAGGATGGTCGTTTCCAGTCGGCGAATTAATGCGGTCATGAACATGCCCCTCTCAATTTCGCAAAATCCT
GACGGGGTGACCGAAACCGCCAGCAGAGGCTATCTGGAATTTGACCATGTCACCTTCGCCTACCCAGGTGAAACTGAAAG
TCCCGTCCTTCATGATATTTCCTTTAAGGCGGGACCTGGTCAAACAACGGCTTTTATCGGTTCGACGGGTTCGGGGAAAT
CCTCCCTGGTTAGCTTGATCCCCCGTTTCTACGATGTCACCCTCGGCAAGATTTTGGTTGACGGTGTTGATGTGCGAGAC
TACAATCTCAAGGCTCTGCGGCAAAAGGTCGGCTTTGTCCCCCAGAAGGCCCTGCTCTTTACTGGCTCCATTGAGGAAAA
TCTCAAGTATGGTAAGAGTGATGCTGACATCGAGGAATTGGACCAGGCAGCATCGGTAGCCCAGGCCAAGGAATTTATCG
ACAGCCGTGAGGAAGGATATGCCACCCACCTAGCCGAAGGTGGTAGCAACCTTTCTGGTGGTCAAAAACAACGTCTGGCC
ATCGCCCGTGCCGTTGTCAAAAAGCCTGATATTTATATTTTTGACGATTCCTTCTCAGCTCTGGACTACAGGACGGATGC
TCAACTGCGAAAACGCCTCAAGGAAGTCACTCAGGATGCCACAGTTTTGATTGTTGCCCAGCGGGTGGGAACCATCATGG
ATGCTGACCAAATTATTGTCCTTGACGAAGGCCAAATCGTCGGTCGAGGCACCCATGAAGAACTGATGAAAACCAACGAT
ATTTATCGCGAAATCGCAGACTCCCAGCTCAAGTCTGGCAAGCTCTTAGAAGATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.6

96.367

0.372