Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   DK181_RS03825 Genome accession   NZ_CP029490
Coordinates   770943..774614 (+) Length   1223 a.a.
NCBI ID   WP_028798484.1    Uniprot ID   A0ABM6W511
Organism   Streptococcus sobrinus strain SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 765943..779614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS03815 (DK182_03815) - 766304..767357 (+) 1054 Protein_705 LacI family DNA-binding transcriptional regulator -
  DK181_RS03820 (DK182_03820) rexB 767605..770943 (+) 3339 WP_028798485.1 ATP-dependent nuclease subunit B Machinery gene
  DK181_RS03825 (DK182_03825) rexA 770943..774614 (+) 3672 WP_028798484.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DK181_RS03830 (DK182_03830) gtfA 775293..776918 (+) 1626 WP_028798483.1 accessory Sec system glycosyltransferase GtfA -
  DK181_RS03835 (DK182_03835) gtfB 776911..778893 (+) 1983 WP_002961309.1 accessory Sec system glycosylation chaperone GtfB -
  DK181_RS11050 - 779010..779168 (-) 159 WP_019769780.1 DUF6609 family protein -
  DK181_RS03840 (DK182_03840) - 779137..779562 (-) 426 WP_028798482.1 DUF6609 family protein -

Sequence

Protein


Download         Length: 1223 a.a.        Molecular weight: 140579.56 Da        Isoelectric Point: 5.3117

>NTDB_id=253733 DK181_RS03825 WP_028798484.1 770943..774614(+) (rexA) [Streptococcus sobrinus strain SL1]
MSFPAFLSFAAIEELKQREPERAKSQEHLARTPEQIQAIYSNGTNILVSASAGSGKTFVMVERIIDMLKRGVAINRLFIS
TFTVKAAGELKERLEKRLEEEIAASQDLELKQHLSSQMADLATADIGTMDAFSQKLVNTYGYSLGISPNFRIMQDESEQA
SLKKEVYDDLFAAYMTGPDGRIFRKLVRNFIGNSKDSRSFRSLVDSIYQFSQSTANPKQWLQEVLLRPYQEDVKSQAQNF
LSTYLKSHRLAETLDQTEKFFKDHLEVARGEFQKKGKYQENVENLLEVLARVDLHGDLGQLYQDLQAIQTISSGRNLTML
AGRTADEDLKAFVKDYNEERKQILEPFLKLEQVLKPLELLTDFQPDLLDLLELLRDFLADYSQQYLEKKKGEAAFEFSDI
AHLAIEILEANPEIRQLYQAKYQEVMVDEYQDNNHMQERLLDLLSNGHNRFMVGDVKQSIYRFRQADPKIFQAKFQTYDQ
PESFQVGKSQGLLILLKENFRSHLEVLQTSNAVFSRLMDQDIGELVYDQSHWLQAGNAQKAEAIPANRTQVFIYDDSQDQ
KENQGQDLLEAGDIRLVAQEIIRLHKEEGVAFDQIALLVSSRNRNDEILSTLKNYGLPVVSEDTGGHYLQALEVMVMLET
LRTINNPLQDQSLVALLKSPMFNFGEDLLTRISLQAKSGNFYDKLLLALSETGDNPQLITAKLHGKIQAFNQVLTAWRNF
AKTNSLHDLIWKIYEDKFYYDYVGALSNGQQRQANLYALTVRANQFEKSGFKGLPRFISMIDRVLNNEKDLADVEVALPK
DAIQLMTIHQSKGLEFPYVFILNLHKSFNKEDEKNRAVLSRDHGLGVRYVVNVADRFPQEKLTQLRLSFDTFPFLSNKQA
LHRADLSEQMRKLYVAMTRAETRLYLVGRGSQAKLQGKYENYRDQEHLALAGREKWISFQDWFLALKQNFPEADLAFDLN
FVSQEDLDQLTPLQPSLPLDVDDQSQNRQSDDIKQALDALEAVEELNHRYQAAINLPTVRTPSQIKKFYQPVMEDQGLDI
MEKRILEPKFDLPSFGKESRVTGAAIGSATHELMQRLPIKPNLSLADLQATLKEVQAEPAVKQRINLTNLLEFFRHHSLG
QEIMSQGDRLVREAPFAMLYEDWESHEKMVIRGIVDGYIRYEDHIVLFDYKTDHYQSTSELVQRYQDQMKLYAQALGKSF
DQTRIEKYLILLGGKEVVVEKLD

Nucleotide


Download         Length: 3672 bp        

>NTDB_id=253733 DK181_RS03825 WP_028798484.1 770943..774614(+) (rexA) [Streptococcus sobrinus strain SL1]
ATGAGCTTTCCAGCATTTCTAAGTTTTGCAGCTATTGAAGAGCTCAAACAAAGAGAGCCTGAGCGGGCCAAGTCTCAAGA
GCACTTGGCGCGAACACCTGAGCAGATTCAGGCCATCTATAGTAACGGGACCAATATTCTCGTTTCAGCGTCGGCGGGTT
CCGGCAAGACCTTCGTCATGGTTGAGCGGATTATTGATATGCTTAAGCGCGGTGTCGCTATTAATCGGCTCTTCATCTCC
ACCTTTACCGTCAAGGCAGCAGGGGAGCTCAAGGAGCGTCTGGAAAAGAGGTTGGAAGAGGAAATCGCGGCTTCACAAGA
TCTGGAGCTCAAGCAGCACCTCTCTTCCCAGATGGCTGATCTGGCTACTGCTGACATTGGCACCATGGATGCTTTTAGCC
AAAAATTGGTCAATACCTATGGCTATAGTTTAGGGATTTCACCAAATTTTCGCATTATGCAGGATGAAAGCGAGCAGGCG
AGTCTGAAAAAAGAGGTCTATGATGATCTTTTTGCGGCATATATGACAGGGCCGGATGGTAGGATCTTTAGAAAGCTTGT
CCGCAATTTCATTGGCAATAGCAAGGACTCAAGAAGTTTTCGGAGTCTGGTTGACAGTATTTATCAGTTCAGCCAGTCAA
CGGCTAATCCAAAGCAGTGGTTGCAGGAGGTCCTGTTGCGGCCTTATCAAGAGGATGTCAAAAGCCAGGCTCAGAATTTT
TTAAGCACCTACCTTAAGAGTCATCGCCTAGCTGAGACCCTAGACCAGACGGAAAAATTCTTCAAGGACCATCTGGAAGT
CGCTCGTGGTGAATTCCAGAAAAAAGGAAAATACCAAGAAAATGTCGAAAATCTTTTGGAAGTTCTGGCAAGAGTTGACC
TACACGGAGACCTAGGCCAGCTCTATCAGGATCTGCAGGCGATTCAGACTATCAGTTCCGGCCGGAATCTGACCATGCTG
GCCGGTAGGACTGCCGATGAGGATTTGAAGGCCTTTGTCAAGGATTATAATGAGGAGCGTAAGCAAATTCTTGAGCCTTT
TCTCAAGCTTGAGCAGGTCCTGAAACCATTGGAGCTCCTGACTGATTTTCAGCCTGACTTACTGGACTTGCTGGAGCTGC
TGCGTGACTTCCTGGCAGATTATTCCCAGCAGTATCTGGAGAAAAAAAAGGGTGAAGCTGCTTTTGAATTTTCGGATATT
GCTCATCTGGCTATCGAGATTTTGGAGGCAAATCCAGAGATTCGTCAGCTTTATCAAGCCAAGTACCAGGAGGTAATGGT
TGATGAATACCAGGATAACAACCACATGCAGGAGCGACTGTTAGACTTGCTCTCAAACGGTCACAATCGCTTTATGGTGG
GGGATGTCAAACAGTCCATCTATCGTTTTCGCCAGGCTGATCCCAAGATTTTCCAGGCTAAATTTCAGACCTATGACCAA
CCAGAAAGCTTCCAAGTTGGCAAAAGTCAGGGACTTTTGATCTTGCTCAAGGAAAATTTCCGCAGTCATTTGGAGGTTTT
GCAAACCAGCAATGCCGTCTTTAGTCGGTTGATGGATCAGGACATTGGTGAGCTGGTCTATGACCAGAGTCACTGGCTCC
AGGCAGGAAATGCCCAGAAAGCTGAGGCCATTCCGGCTAACCGGACTCAAGTTTTCATTTACGACGATAGTCAAGACCAA
AAAGAAAATCAGGGCCAGGACCTCCTTGAGGCCGGTGATATCAGGCTGGTTGCCCAGGAAATTATCCGTCTTCACAAAGA
AGAAGGAGTGGCTTTCGACCAGATTGCCCTTTTGGTTTCGTCAAGGAACCGGAATGATGAAATCCTTTCAACCCTTAAAA
ACTATGGCCTTCCAGTCGTTTCAGAAGATACTGGCGGCCACTACCTTCAAGCCTTAGAAGTTATGGTCATGTTGGAAACT
CTAAGGACCATTAATAATCCTCTGCAAGATCAGTCTCTGGTTGCCCTGCTCAAGTCACCCATGTTTAACTTTGGAGAAGA
TTTGCTGACGAGGATTTCCCTCCAGGCTAAGTCAGGTAATTTTTACGACAAGCTCCTCTTGGCCCTGTCTGAAACTGGAG
ACAATCCGCAGCTGATTACGGCTAAACTCCACGGAAAAATTCAGGCCTTTAATCAGGTCTTGACTGCTTGGCGAAATTTT
GCCAAGACCAACAGTCTCCACGATTTGATTTGGAAAATCTACGAGGATAAATTTTACTATGACTATGTTGGTGCCCTGTC
CAATGGTCAACAAAGGCAGGCCAATCTCTATGCCTTGACTGTACGGGCCAACCAGTTTGAGAAAAGTGGCTTCAAGGGCC
TGCCTCGCTTCATCAGTATGATTGACCGGGTCCTAAACAATGAGAAGGACCTGGCCGATGTCGAAGTCGCCCTGCCCAAG
GATGCCATTCAACTGATGACCATCCACCAAAGCAAGGGGCTGGAGTTTCCGTATGTCTTTATTCTCAATCTGCATAAGTC
CTTCAACAAGGAAGACGAGAAGAATAGGGCAGTTCTCAGCCGTGACCATGGTCTGGGTGTCCGTTATGTGGTTAATGTAG
CCGACCGTTTTCCTCAAGAAAAGCTGACCCAGCTCAGGCTCTCCTTTGACACCTTTCCATTCCTGTCTAATAAACAAGCC
CTCCATCGGGCTGACTTGTCTGAACAAATGCGCAAGCTCTATGTTGCTATGACACGGGCGGAAACCAGGCTTTATCTGGT
TGGCCGAGGCAGTCAGGCAAAATTGCAAGGAAAGTATGAAAACTACCGAGACCAAGAGCACCTAGCGCTCGCTGGACGGG
AAAAGTGGATTAGTTTTCAAGATTGGTTTCTAGCCTTAAAACAAAATTTTCCAGAAGCTGATTTGGCTTTTGACCTGAAT
TTTGTGAGTCAAGAAGACCTGGACCAGTTGACTCCCCTCCAGCCCAGTCTCCCCTTAGATGTGGATGACCAGAGTCAGAA
TCGTCAGTCAGACGATATCAAGCAGGCCCTAGATGCCTTGGAAGCTGTTGAAGAGCTCAATCATCGATACCAGGCGGCTA
TCAATCTGCCAACCGTTCGAACACCCAGCCAAATTAAGAAATTCTACCAGCCTGTCATGGAGGATCAGGGCCTGGATATT
ATGGAAAAACGGATTCTGGAGCCTAAATTTGACCTGCCAAGCTTTGGAAAAGAGTCGCGGGTGACAGGAGCAGCAATCGG
TTCTGCCACCCATGAGCTCATGCAGCGACTGCCCATTAAGCCTAATCTCAGCCTGGCTGACCTGCAGGCGACCCTGAAAG
AGGTCCAGGCAGAACCCGCTGTCAAACAACGCATCAACCTGACCAATCTATTGGAATTCTTCCGTCACCATAGTCTGGGA
CAGGAAATCATGAGCCAGGGAGACAGGCTAGTCAGGGAAGCTCCCTTTGCCATGCTCTATGAAGATTGGGAGTCTCATGA
AAAAATGGTCATCCGTGGGATAGTTGATGGCTATATCCGCTATGAGGACCACATCGTTCTCTTTGACTATAAGACTGACC
ATTACCAAAGTACTTCTGAACTAGTGCAGCGATACCAAGACCAAATGAAACTCTACGCCCAGGCCCTTGGTAAATCCTTC
GACCAAACAAGAATTGAGAAATACCTGATTTTGCTGGGCGGTAAAGAGGTCGTGGTAGAGAAATTGGATTAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(356-478)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(32-257)

UvrD-like helicase C-terminal domain (UvrD_C)

(494-906)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1058-1202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

49.155

100

0.5

Multiple sequence alignment