Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A5958_RS07560 Genome accession   NZ_CP024479
Coordinates   1296478..1297107 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2011C-4315     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291478..1302107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5958_RS07545 helD 1291720..1293774 (-) 2055 WP_000420533.1 DNA helicase IV -
  A5958_RS07550 yccF 1293897..1294343 (+) 447 WP_001261231.1 YccF domain-containing protein -
  A5958_RS07555 yccS 1294353..1296515 (+) 2163 WP_000875044.1 YccS family putative transporter -
  A5958_RS07560 sxy/tfoX 1296478..1297107 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A5958_RS07565 sulA 1297326..1297835 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A5958_RS07575 ompA 1298192..1299232 (+) 1041 WP_000750416.1 porin OmpA -
  A5958_RS07580 matP 1299308..1299760 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A5958_RS07585 ycbZ 1299946..1301706 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253711 A5958_RS07560 WP_000839153.1 1296478..1297107(-) (sxy/tfoX) [Escherichia coli strain 2011C-4315]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253711 A5958_RS07560 WP_000839153.1 1296478..1297107(-) (sxy/tfoX) [Escherichia coli strain 2011C-4315]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment