Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DKK89_RS07080 Genome accession   NZ_CP029474
Coordinates   1391912..1392586 (+) Length   224 a.a.
NCBI ID   WP_001166500.1    Uniprot ID   Q99VW2
Organism   Staphylococcus aureus strain USA 100 isolate 30-47     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386912..1397586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK89_RS07050 (DKK89_07045) - 1387127..1388194 (+) 1068 WP_000980137.1 membrane protein -
  DKK89_RS07055 (DKK89_07050) - 1388345..1389388 (+) 1044 WP_127161446.1 alpha/beta hydrolase -
  DKK89_RS07065 (DKK89_07060) - 1389717..1390145 (+) 429 WP_000198504.1 hypothetical protein -
  DKK89_RS07070 (DKK89_07065) - 1390354..1390860 (-) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  DKK89_RS07075 (DKK89_07070) graX 1390973..1391896 (+) 924 WP_000802953.1 auxiliary protein GraX/ApsX -
  DKK89_RS07080 (DKK89_07075) braR 1391912..1392586 (+) 675 WP_001166500.1 response regulator transcription factor GraR/ApsR Regulator
  DKK89_RS07085 (DKK89_07080) graS 1392579..1393619 (+) 1041 WP_001061264.1 histidine kinase GraS/ApsS -
  DKK89_RS07090 (DKK89_07085) vraF 1393763..1394524 (+) 762 WP_000985996.1 ABC transporter ATP-binding protein VraF -
  DKK89_RS07095 (DKK89_07090) vraG 1394514..1396403 (+) 1890 WP_000143607.1 ABC transporter permease VraG -
  DKK89_RS14510 - 1396475..1396546 (-) 72 Protein_1322 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26065.87 Da        Isoelectric Point: 4.3563

>NTDB_id=253629 DKK89_RS07080 WP_001166500.1 1391912..1392586(+) (braR) [Staphylococcus aureus strain USA 100 isolate 30-47]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=253629 DKK89_RS07080 WP_001166500.1 1391912..1392586(+) (braR) [Staphylococcus aureus strain USA 100 isolate 30-47]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAACCTTTCTATACCAATGTATT
AATTGCTAAATTACAAGCGATTTATCGTCGTGTCTATGAGTTTACAGCTGAAGAAAAACGTACATTGACTTGGCAAGATG
CTGTCGTTGATCTATCAAAAGATAGTATACAAAAAGGTGACGATACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACCAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGT
TAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTAGTATGGATAGTGCAATCGAAA
CAAAAGTAGGAAAAGGATATATGGCTCATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-221)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99VW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.455

98.214

0.397