Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DKG78_RS19465 Genome accession   NZ_CP029466
Coordinates   3951568..3952362 (-) Length   264 a.a.
NCBI ID   WP_007407895.1    Uniprot ID   A7ZAN9
Organism   Bacillus amyloliquefaciens strain HM618     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3946568..3957362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS19445 (DKG78_19785) - 3946913..3947920 (-) 1008 WP_192452777.1 ThiF family adenylyltransferase -
  DKG78_RS19450 (DKG78_19790) - 3948152..3949570 (-) 1419 WP_192452778.1 cell wall metabolism sensor histidine kinase WalK -
  DKG78_RS19455 (DKG78_19795) - 3949567..3949776 (-) 210 WP_025285567.1 winged helix-turn-helix domain-containing protein -
  DKG78_RS19460 (DKG78_19800) htrA 3950285..3951481 (-) 1197 WP_007614967.1 S1C family serine protease Regulator
  DKG78_RS19465 (DKG78_19805) vicX 3951568..3952362 (-) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  DKG78_RS19470 (DKG78_19810) - 3952377..3953216 (-) 840 WP_151280932.1 two-component system regulatory protein YycI -
  DKG78_RS19475 (DKG78_19815) yycH 3953203..3954561 (-) 1359 WP_069007591.1 two-component system activity regulator YycH -
  DKG78_RS19480 (DKG78_19820) walK 3954551..3956386 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  DKG78_RS19485 (DKG78_19825) walR 3956393..3957100 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.20 Da        Isoelectric Point: 6.0280

>NTDB_id=253602 DKG78_RS19465 WP_007407895.1 3951568..3952362(-) (vicX) [Bacillus amyloliquefaciens strain HM618]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=253602 DKG78_RS19465 WP_007407895.1 3951568..3952362(-) (vicX) [Bacillus amyloliquefaciens strain HM618]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCACTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCT
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCCAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTCGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment