Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DKG78_RS19120 Genome accession   NZ_CP029466
Coordinates   3874041..3874730 (-) Length   229 a.a.
NCBI ID   WP_015240901.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3869041..3879730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS19100 (DKG78_19430) - 3869946..3870293 (-) 348 WP_060562329.1 YxeA family protein -
  DKG78_RS19105 (DKG78_19435) yxdM 3870307..3872175 (-) 1869 WP_136396734.1 ABC transporter permease YxdM -
  DKG78_RS19110 (DKG78_19440) yxdL 3872150..3872923 (-) 774 WP_015240899.1 ABC transporter ATP-binding protein YxdL -
  DKG78_RS19115 (DKG78_19445) yxdK 3873067..3874044 (-) 978 WP_192452758.1 two-component system sensor histidine kinase YxdK -
  DKG78_RS19120 (DKG78_19450) braR 3874041..3874730 (-) 690 WP_015240901.1 two-component system response regulator YxdJ Regulator
  DKG78_RS19125 (DKG78_19455) - 3874880..3876319 (-) 1440 WP_192452759.1 sensor histidine kinase KdpD -
  DKG78_RS19130 (DKG78_19460) - 3876316..3877038 (-) 723 WP_012118836.1 response regulator transcription factor -
  DKG78_RS19135 (DKG78_19465) - 3877281..3878192 (+) 912 WP_160242443.1 ABC transporter ATP-binding protein -
  DKG78_RS19140 (DKG78_19470) - 3878189..3878947 (+) 759 WP_012118838.1 ABC transporter permease -
  DKG78_RS19145 (DKG78_19475) - 3878964..3879698 (+) 735 WP_012118839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26589.27 Da        Isoelectric Point: 4.7748

>NTDB_id=253598 DKG78_RS19120 WP_015240901.1 3874041..3874730(-) (braR) [Bacillus amyloliquefaciens strain HM618]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAADDFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=253598 DKG78_RS19120 WP_015240901.1 3874041..3874730(-) (braR) [Bacillus amyloliquefaciens strain HM618]
ATGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGATGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTAATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393