Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Y75_RS04990 Genome accession   NC_007779
Coordinates   1021560..1022189 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. W3110     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016560..1027189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y75_RS04965 (Y75_p0927) ycbZ 1016961..1018721 (-) 1761 WP_000156518.1 AAA family ATPase -
  Y75_RS04970 (Y75_p0928) matP 1018907..1019359 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  Y75_RS04975 (Y75_p0929) ompA 1019435..1020475 (-) 1041 WP_000750416.1 porin OmpA -
  Y75_RS04985 (Y75_p0930) sulA 1020832..1021341 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  Y75_RS04990 (Y75_p0931) sxy/tfoX 1021560..1022189 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  Y75_RS04995 (Y75_p0932) yccS 1022152..1024314 (-) 2163 WP_000875061.1 YccS family putative transporter -
  Y75_RS05000 (Y75_p0933) yccF 1024324..1024770 (-) 447 WP_001261235.1 YccF domain-containing protein -
  Y75_RS05005 (Y75_p0934) helD 1024893..1026947 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=25357 Y75_RS04990 WP_000839153.1 1021560..1022189(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. W3110]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=25357 Y75_RS04990 WP_000839153.1 1021560..1022189(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. W3110]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment