Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   DKG78_RS11375 Genome accession   NZ_CP029466
Coordinates   2319722..2321212 (-) Length   496 a.a.
NCBI ID   WP_132105289.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2314722..2326212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS11345 (DKG78_11525) gudB 2314775..2316049 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  DKG78_RS11350 (DKG78_11530) - 2316210..2316794 (-) 585 WP_003153412.1 genetic competence negative regulator -
  DKG78_RS11355 (DKG78_11535) - 2316946..2317734 (-) 789 WP_020956008.1 metallophosphoesterase -
  DKG78_RS11360 (DKG78_11540) - 2317821..2318279 (-) 459 WP_007409443.1 YpbF family protein -
  DKG78_RS11365 (DKG78_11545) - 2318348..2319142 (-) 795 WP_192452624.1 LysM peptidoglycan-binding domain-containing protein -
  DKG78_RS11370 (DKG78_11550) - 2319120..2319707 (-) 588 WP_015240111.1 CPBP family intramembrane glutamic endopeptidase -
  DKG78_RS11375 (DKG78_11555) recS 2319722..2321212 (-) 1491 WP_132105289.1 ATP-dependent DNA helicase RecQ Machinery gene
  DKG78_RS11380 (DKG78_11560) - 2321205..2322263 (-) 1059 WP_132105291.1 helix-turn-helix domain-containing protein -
  DKG78_RS11385 (DKG78_11565) - 2322532..2322780 (+) 249 WP_003153403.1 ferredoxin -
  DKG78_RS11390 (DKG78_11570) - 2322921..2323493 (-) 573 WP_015240114.1 ECF transporter S component -
  DKG78_RS11395 (DKG78_11575) serA 2323982..2325559 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55916.89 Da        Isoelectric Point: 6.2478

>NTDB_id=253540 DKG78_RS11375 WP_132105289.1 2319722..2321212(-) (recS) [Bacillus amyloliquefaciens strain HM618]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVSVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAENLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYGLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=253540 DKG78_RS11375 WP_132105289.1 2319722..2321212(-) (recS) [Bacillus amyloliquefaciens strain HM618]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCTCTGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGACCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAATCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGGAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGGCCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685