Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   DKG78_RS10625 Genome accession   NZ_CP029466
Coordinates   2192556..2193692 (+) Length   378 a.a.
NCBI ID   WP_076425302.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2187556..2198692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS10590 (DKG78_10785) - 2187945..2188373 (+) 429 WP_132104998.1 hypothetical protein -
  DKG78_RS10595 (DKG78_10790) - 2188448..2188969 (+) 522 WP_043021831.1 hypothetical protein -
  DKG78_RS20315 - 2189137..2189364 (+) 228 Protein_2056 ATP-dependent DNA ligase -
  DKG78_RS10600 (DKG78_10795) - 2189622..2190086 (+) 465 WP_043021832.1 hypothetical protein -
  DKG78_RS10605 (DKG78_10800) - 2190278..2190490 (-) 213 WP_043021833.1 hypothetical protein -
  DKG78_RS10615 (DKG78_10810) - 2191139..2191513 (+) 375 WP_015240044.1 YoqO family protein -
  DKG78_RS20400 - 2191530..2191608 (-) 79 Protein_2060 hypothetical protein -
  DKG78_RS10620 (DKG78_10815) - 2191747..2192199 (-) 453 WP_192452615.1 hypothetical protein -
  DKG78_RS10625 (DKG78_10820) rapF 2192556..2193692 (+) 1137 WP_076425302.1 Rap family tetratricopeptide repeat protein Regulator
  DKG78_RS10630 (DKG78_10825) - 2193682..2193864 (+) 183 WP_041482200.1 hypothetical protein -
  DKG78_RS10635 (DKG78_10830) - 2194169..2194627 (+) 459 WP_225649644.1 hypothetical protein -
  DKG78_RS10640 (DKG78_10835) - 2194902..2195240 (-) 339 WP_032870002.1 hypothetical protein -
  DKG78_RS20080 - 2195448..2195663 (-) 216 WP_237562767.1 N-acetyltransferase -
  DKG78_RS10650 (DKG78_10845) - 2195991..2196587 (-) 597 WP_032870004.1 SMI1/KNR4 family protein -
  DKG78_RS10655 (DKG78_10850) - 2196649..2197146 (-) 498 WP_032870144.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44672.40 Da        Isoelectric Point: 4.9746

>NTDB_id=253537 DKG78_RS10625 WP_076425302.1 2192556..2193692(+) (rapF) [Bacillus amyloliquefaciens strain HM618]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKEEVKQEIELMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHEMYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQTNSLHNSSRLLDILLMLAKTHFKLFNTIDGKQVCKQGLTLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=253537 DKG78_RS10625 WP_076425302.1 2192556..2193692(+) (rapF) [Bacillus amyloliquefaciens strain HM618]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGGTTATTCAGTGTTGC
AGATGCAGAAATCTTGAAGGAAGAAGTGAAGCAAGAAATAGAGCTTATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCACACGAAATGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTGTCAATTTATCAAACTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTTTAAT
GTTGGCAAAAACGCACTTTAAATTGTTCAACACGATTGATGGAAAACAGGTTTGTAAACAAGGTCTCACGCTATCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(187-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

45.932

100

0.463
  rapC Bacillus subtilis subsp. subtilis str. 168

45.767

100

0.458

Multiple sequence alignment