Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   DKG78_RS08170 Genome accession   NZ_CP029466
Coordinates   1559452..1559901 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain HM618     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554452..1564901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS08130 (DKG78_08260) ctaE 1554571..1555194 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  DKG78_RS08135 (DKG78_08265) ctaF 1555197..1555529 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  DKG78_RS08140 (DKG78_08270) ctaG 1555554..1556438 (+) 885 WP_020953993.1 cytochrome c oxidase assembly factor CtaG -
  DKG78_RS08145 (DKG78_08275) - 1556473..1556832 (-) 360 WP_007409688.1 YugN family protein -
  DKG78_RS08150 (DKG78_08280) - 1556973..1557416 (+) 444 WP_003154478.1 CBS domain-containing protein -
  DKG78_RS08155 (DKG78_08285) - 1557501..1558541 (+) 1041 WP_007409690.1 CAP domain-containing protein -
  DKG78_RS08160 (DKG78_08290) - 1558716..1559126 (+) 411 WP_192452979.1 YlbD family protein -
  DKG78_RS08165 (DKG78_08295) - 1559142..1559381 (+) 240 WP_003154475.1 YlbE-like family protein -
  DKG78_RS08170 (DKG78_08300) ylbF 1559452..1559901 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  DKG78_RS08175 (DKG78_08305) - 1559960..1560232 (+) 273 WP_088462389.1 YlbG family protein -
  DKG78_RS08180 (DKG78_08310) rsmD 1560530..1561084 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DKG78_RS08185 (DKG78_08315) coaD 1561089..1561571 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  DKG78_RS08190 (DKG78_08320) ylbJ 1561590..1562816 (-) 1227 WP_015239807.1 sporulation integral membrane protein YlbJ -
  DKG78_RS08195 (DKG78_08325) - 1562996..1563775 (+) 780 WP_007409696.1 patatin family protein -
  DKG78_RS08200 (DKG78_08330) sepM 1563781..1564803 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=253516 DKG78_RS08170 WP_003154472.1 1559452..1559901(+) (ylbF) [Bacillus amyloliquefaciens strain HM618]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=253516 DKG78_RS08170 WP_003154472.1 1559452..1559901(+) (ylbF) [Bacillus amyloliquefaciens strain HM618]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTAGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879