Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DKG78_RS04565 Genome accession   NZ_CP029466
Coordinates   885438..886154 (+) Length   238 a.a.
NCBI ID   WP_012117069.1    Uniprot ID   A7Z2F7
Organism   Bacillus amyloliquefaciens strain HM618     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 880438..891154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS04535 (DKG78_04595) - 880618..880995 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  DKG78_RS04540 (DKG78_04600) - 881005..881436 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  DKG78_RS04545 (DKG78_04605) - 881452..881694 (-) 243 WP_003155595.1 spore germination protein -
  DKG78_RS04550 (DKG78_04610) - 881709..881969 (-) 261 WP_007408496.1 spore germination protein -
  DKG78_RS04555 (DKG78_04615) treP 882240..883655 (+) 1416 WP_025284416.1 PTS system trehalose-specific EIIBC component -
  DKG78_RS04560 (DKG78_04620) treC 883731..885416 (+) 1686 WP_132106449.1 alpha,alpha-phosphotrehalase -
  DKG78_RS04565 (DKG78_04625) treR 885438..886154 (+) 717 WP_012117069.1 trehalose operon repressor Regulator
  DKG78_RS04570 (DKG78_04630) - 886287..886952 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  DKG78_RS04575 (DKG78_04635) - 886988..887749 (-) 762 WP_015239392.1 YibE/F family protein -
  DKG78_RS04580 (DKG78_04640) - 887746..888885 (-) 1140 WP_072588901.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27484.50 Da        Isoelectric Point: 7.3803

>NTDB_id=253483 DKG78_RS04565 WP_012117069.1 885438..886154(+) (treR) [Bacillus amyloliquefaciens strain HM618]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=253483 DKG78_RS04565 WP_012117069.1 885438..886154(+) (treR) [Bacillus amyloliquefaciens strain HM618]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACACTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z2F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424

Multiple sequence alignment