Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DKG78_RS01345 Genome accession   NZ_CP029466
Coordinates   221117..221326 (+) Length   69 a.a.
NCBI ID   WP_192452832.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 216117..226326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS01325 (DKG78_01325) - 216420..216977 (+) 558 WP_022552615.1 SMI1/KNR4 family protein -
  DKG78_RS01330 (DKG78_01330) - 217072..217350 (-) 279 WP_095061672.1 hypothetical protein -
  DKG78_RS01335 (DKG78_01335) - 217357..219066 (-) 1710 WP_192452830.1 ribonuclease YeeF family protein -
  DKG78_RS01340 (DKG78_01340) rapC 219287..220417 (+) 1131 WP_192452831.1 Rap family tetratricopeptide repeat protein Regulator
  DKG78_RS20190 - 220417..220551 (+) 135 WP_254922222.1 hypothetical protein -
  DKG78_RS19950 (DKG78_01345) - 220601..220789 (-) 189 WP_225649662.1 hypothetical protein -
  DKG78_RS01345 (DKG78_01355) dinR/lexA 221117..221326 (+) 210 WP_192452832.1 LexA family transcriptional regulator Regulator

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7986.16 Da        Isoelectric Point: 9.7790

>NTDB_id=253463 DKG78_RS01345 WP_192452832.1 221117..221326(+) (dinR/lexA) [Bacillus amyloliquefaciens strain HM618]
MRNLTKRQEDALNAISNFLNQYGVAPTHRELMEELGLQSTSSVKGLLDRLREKNYVTWQEGLPRTIKLL

Nucleotide


Download         Length: 210 bp        

>NTDB_id=253463 DKG78_RS01345 WP_192452832.1 221117..221326(+) (dinR/lexA) [Bacillus amyloliquefaciens strain HM618]
ATGCGTAACCTTACAAAAAGACAAGAAGATGCTTTAAACGCGATATCCAATTTCTTAAATCAGTATGGAGTGGCCCCGAC
ACATCGGGAGTTAATGGAGGAACTTGGTTTGCAGTCTACCAGTTCGGTGAAGGGGCTACTGGATAGGTTAAGAGAAAAGA
ATTACGTAACATGGCAAGAAGGATTACCGCGGACAATTAAATTATTATAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.13

100

0.391