Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DJ572_RS19990 Genome accession   NZ_CP029461
Coordinates   3857634..3858323 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain QB61     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3852634..3863323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS19970 (DJ572_19850) yxeA 3853539..3853886 (-) 348 WP_003227084.1 YxeA family protein -
  DJ572_RS19975 (DJ572_19855) yxdM 3853900..3855768 (-) 1869 WP_119899948.1 ABC transporter permease YxdM -
  DJ572_RS19980 (DJ572_19860) yxdL 3855743..3856516 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  DJ572_RS19985 (DJ572_19865) yxdK 3856660..3857637 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  DJ572_RS19990 (DJ572_19870) braR 3857634..3858323 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  DJ572_RS19995 (DJ572_19875) iolJ 3858431..3859303 (-) 873 WP_119899950.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  DJ572_RS20000 (DJ572_19880) iolI 3859324..3860160 (-) 837 WP_080529990.1 2-keto-myo-inositol isomerase -
  DJ572_RS20005 (DJ572_19885) iolH 3860246..3861115 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  DJ572_RS20010 (DJ572_19890) iolG 3861135..3862169 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=253441 DJ572_RS19990 WP_003243527.1 3857634..3858323(-) (braR) [Bacillus subtilis strain QB61]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=253441 DJ572_RS19990 WP_003243527.1 3857634..3858323(-) (braR) [Bacillus subtilis strain QB61]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406