Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DJ572_RS18445 Genome accession   NZ_CP029461
Coordinates   3561439..3562572 (-) Length   377 a.a.
NCBI ID   WP_088327159.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556439..3567572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS18405 (DJ572_18300) ywnA 3556580..3556981 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  DJ572_RS18410 (DJ572_18305) ureC 3557116..3558825 (-) 1710 WP_038429770.1 urease subunit alpha -
  DJ572_RS18415 (DJ572_18310) ureB 3558822..3559196 (-) 375 WP_088327157.1 urease subunit beta -
  DJ572_RS18420 (DJ572_18315) ureA 3559193..3559510 (-) 318 WP_003227724.1 urease subunit gamma -
  DJ572_RS18425 (DJ572_18320) - 3559668..3559862 (-) 195 WP_119899878.1 hypothetical protein -
  DJ572_RS21840 - 3560164..3560332 (-) 169 Protein_3574 urea ABC transporter substrate-binding protein -
  DJ572_RS18435 (DJ572_18335) csbD 3560545..3560733 (-) 189 WP_003227718.1 stress response protein CsbD -
  DJ572_RS18440 (DJ572_18340) - 3560806..3561285 (-) 480 WP_003244390.1 hypothetical protein -
  DJ572_RS18445 (DJ572_18345) rapC 3561439..3562572 (-) 1134 WP_088327159.1 response regulator aspartate phosphatase RapB Regulator
  DJ572_RS18455 (DJ572_18355) moaA 3562764..3563789 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  DJ572_RS18460 (DJ572_18360) fdhD 3563805..3564593 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  DJ572_RS18465 (DJ572_18365) - 3564839..3565000 (-) 162 WP_014478245.1 hypothetical protein -
  DJ572_RS18470 (DJ572_18370) ywmD 3565095..3565769 (-) 675 WP_003243553.1 VWA domain-containing protein -
  DJ572_RS18475 - 3565822..3565962 (-) 141 WP_014478246.1 hypothetical protein -
  DJ572_RS18480 (DJ572_18380) ywmC 3566093..3566776 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45124.25 Da        Isoelectric Point: 4.7156

>NTDB_id=253434 DJ572_RS18445 WP_088327159.1 3561439..3562572(-) (rapC) [Bacillus subtilis strain QB61]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEETQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKEELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=253434 DJ572_RS18445 WP_088327159.1 3561439..3562572(-) (rapC) [Bacillus subtilis strain QB61]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAAACTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGAGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAAGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(153-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424