Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CRH16_RS11275 Genome accession   NZ_CP024412
Coordinates   2206049..2206687 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain SH0104     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201049..2211687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS11230 rplP 2201082..2201492 (-) 411 WP_006249357.1 50S ribosomal protein L16 -
  CRH16_RS11235 rpsC 2201505..2202209 (-) 705 WP_010786465.1 30S ribosomal protein S3 -
  CRH16_RS11240 rplV 2202227..2202559 (-) 333 WP_005706427.1 50S ribosomal protein L22 -
  CRH16_RS11245 rpsS 2202570..2202845 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  CRH16_RS11250 rplB 2202874..2203695 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  CRH16_RS11255 rplW 2203716..2204021 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  CRH16_RS11260 rplD 2204018..2204620 (-) 603 WP_075621240.1 50S ribosomal protein L4 -
  CRH16_RS11265 rplC 2204636..2205262 (-) 627 WP_010786462.1 50S ribosomal protein L3 -
  CRH16_RS11270 rpsJ 2205279..2205590 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  CRH16_RS11275 sxy/tfoX 2206049..2206687 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  CRH16_RS11280 fumC 2206834..2208228 (+) 1395 WP_075593089.1 class II fumarate hydratase -
  CRH16_RS11285 - 2208410..2209588 (+) 1179 WP_015939850.1 ATP-grasp domain-containing protein -
  CRH16_RS11290 - 2209659..2210630 (-) 972 WP_112062742.1 IS110 family transposase -
  CRH16_RS11295 - 2210885..2211643 (+) 759 WP_021112874.1 esterase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=253429 CRH16_RS11275 WP_005711167.1 2206049..2206687(+) (sxy/tfoX) [Glaesserella parasuis strain SH0104]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=253429 CRH16_RS11275 WP_005711167.1 2206049..2206687(+) (sxy/tfoX) [Glaesserella parasuis strain SH0104]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment