Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | CRH16_RS08215 | Genome accession | NZ_CP024412 |
| Coordinates | 1596026..1596607 (+) | Length | 193 a.a. |
| NCBI ID | WP_010786056.1 | Uniprot ID | A0A859IE21 |
| Organism | Glaesserella parasuis strain SH0104 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1591026..1601607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRH16_RS08195 | - | 1592919..1593155 (+) | 237 | WP_015940086.1 | hypothetical protein | - |
| CRH16_RS08200 | - | 1593207..1593410 (+) | 204 | WP_075605398.1 | hypothetical protein | - |
| CRH16_RS08205 | - | 1593611..1594771 (+) | 1161 | WP_035520425.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| CRH16_RS08210 | - | 1594815..1595786 (-) | 972 | WP_012621529.1 | IS110 family transposase | - |
| CRH16_RS08215 | pilF | 1596026..1596607 (+) | 582 | WP_010786056.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| CRH16_RS08220 | - | 1596669..1597604 (+) | 936 | WP_112063078.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| CRH16_RS08225 | greB | 1597604..1598092 (+) | 489 | WP_005710400.1 | transcription elongation factor GreB | - |
| CRH16_RS08245 | - | 1598618..1599916 (+) | 1299 | WP_112063079.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CRH16_RS08250 | - | 1600001..1600534 (-) | 534 | WP_015940082.1 | TIGR00645 family protein | - |
| CRH16_RS08255 | - | 1600623..1601261 (-) | 639 | WP_038514499.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 22339.29 Da Isoelectric Point: 8.4221
>NTDB_id=253418 CRH16_RS08215 WP_010786056.1 1596026..1596607(+) (pilF) [Glaesserella parasuis strain SH0104]
MTFAKFFRNLTACSVALWLVACTNQTAKVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR
MTFAKFFRNLTACSVALWLVACTNQTAKVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR
Nucleotide
Download Length: 582 bp
>NTDB_id=253418 CRH16_RS08215 WP_010786056.1 1596026..1596607(+) (pilF) [Glaesserella parasuis strain SH0104]
ATGACCTTCGCAAAATTTTTCCGTAATTTGACCGCTTGTAGTGTGGCGTTATGGCTTGTTGCTTGTACAAATCAAACCGC
AAAGGTGGATTTTAACCGTTCAGAAGCCGTCAAAGCTCGTATTAATTTGGCTCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAGAACATTGACAAAGCGCTTGAACATGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTACAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG
ATGACCTTCGCAAAATTTTTCCGTAATTTGACCGCTTGTAGTGTGGCGTTATGGCTTGTTGCTTGTACAAATCAAACCGC
AAAGGTGGATTTTAACCGTTCAGAAGCCGTCAAAGCTCGTATTAATTTGGCTCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAGAACATTGACAAAGCGCTTGAACATGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGAAGCCTATTACAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
97.927 |
100 |
0.979 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
45.251 |
92.746 |
0.42 |