Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   DJ572_RS08670 Genome accession   NZ_CP029461
Coordinates   1660596..1661027 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain QB61     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655596..1666027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS08650 (DJ572_08645) spoVS 1656157..1656417 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  DJ572_RS08655 (DJ572_08650) tdh 1656683..1657726 (+) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  DJ572_RS08660 (DJ572_08655) kbl 1657739..1658917 (+) 1179 WP_119899335.1 glycine C-acetyltransferase -
  DJ572_RS08665 (DJ572_08660) miaB 1659065..1660594 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  DJ572_RS08670 (DJ572_08665) ymcA 1660596..1661027 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  DJ572_RS08675 (DJ572_08670) cotE 1661289..1661834 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  DJ572_RS08680 (DJ572_08675) hexA 1661967..1664543 (+) 2577 WP_119899337.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=253368 DJ572_RS08670 WP_003231834.1 1660596..1661027(+) (ymcA) [Bacillus subtilis strain QB61]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=253368 DJ572_RS08670 WP_003231834.1 1660596..1661027(+) (ymcA) [Bacillus subtilis strain QB61]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1