Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A5960_RS10795 Genome accession   NZ_CP024289
Coordinates   2010533..2011162 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O178:H19 strain 2012C-4431     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005533..2016162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5960_RS10780 helD 2005775..2007829 (-) 2055 WP_000420536.1 DNA helicase IV -
  A5960_RS10785 yccF 2007952..2008398 (+) 447 WP_001261235.1 YccF domain-containing protein -
  A5960_RS10790 yccS 2008408..2010570 (+) 2163 WP_000875015.1 YccS family putative transporter -
  A5960_RS10795 sxy/tfoX 2010533..2011162 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A5960_RS10800 sulA 2011381..2011890 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A5960_RS10810 ompA 2012247..2013299 (+) 1053 WP_000750419.1 porin OmpA -
  A5960_RS10815 matP 2013374..2013826 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  A5960_RS10820 ycbZ 2014012..2015772 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253350 A5960_RS10795 WP_000839153.1 2010533..2011162(-) (sxy/tfoX) [Escherichia coli O178:H19 strain 2012C-4431]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253350 A5960_RS10795 WP_000839153.1 2010533..2011162(-) (sxy/tfoX) [Escherichia coli O178:H19 strain 2012C-4431]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment