Detailed information NTG0025335

Bioinformatically predicted

Overview

• Name: pilB/pilB1
• Type: Machinery gene
• Locus tag: CYB_RS10210
• Genome accession: NC_007776
• Coordinates: 2241125..2243206 (-)
• Length: 693 a.a.
• NCBI ID: WP_011433724.1
• Uniprot ID: -
• Organism: Synechococcus sp. JA-2-3B'a(2-13)
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2236125..2248206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CYB_RS10200 (CYB_2141)	-	2238427..2239653 (-)	1227	WP_011433722.1	type II secretion system F family protein	-
CYB_RS10205 (CYB_2142)	-	2239851..2240993 (-)	1143	WP_238376760.1	type IV pilus twitching motility protein PilT	-
CYB_RS10210 (CYB_2143)	pilB/pilB1	2241125..2243206 (-)	2082	WP_011433724.1	GspE/PulE family protein	Machinery gene
CYB_RS10215 (CYB_2144)	-	2243363..2245000 (-)	1638	WP_011433725.1	acetolactate synthase large subunit	-
CYB_RS10220 (CYB_2145)	-	2245179..2246231 (+)	1053	WP_011433726.1	dipeptide epimerase	-
CYB_RS10225 (CYB_2146)	-	2246231..2247292 (+)	1062	WP_011433727.1	DUF1611 domain-containing protein	-

Sequence

Protein

• Length: 693 a.a.
• Molecular weight: 77058.85 Da
• Isoelectric Point: 6.3148

>NTDB_id=25335 CYB_RS10210 WP_011433724.1 2241125..2243206(-) (pilB/pilB1) [Synechococcus sp. JA-2-3B'a(2-13)]
MNDLPPPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQNALKADREGNSKALALVVKDIVGKEITPDL
ERAYKRQQLFELKIIYGIPSLDVDLEPVEISEMIGLIDSILPLDICNRYKFLPIRRRDNQVTVAMVKPDNLQALDDIQRR
FRIQGLKLQRRVFTQRDFETLISRYMDAQAELLAIKGINDAAAAQQAAAAQQEEEVVVNTAEIDLDAIEDVAADEAGEGS
LEQQVKSADDAPIIKLSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPKKIVPALTARFKIISNLNIAE
RRMPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVLRVLDNSATQLGLDKLITDPETLESFKEIVRRPFGLILVTGPTGSG
KTTTLYSALAEVNDPGINISTAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLRQDPDVILVGETRDHETAKTAIEASL
TGHLVLTTLHTNDAPGAIARLTEMGIEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTPEELARYGLTLSGDGEQLTFYK
ANKLSPKEVEQRKATGKPICEKCGGVGYKGRVGVYEFMRMNDRLADLINKEAPTEVIKEAAVESGMKTLLAYSLMLVKQG
LTTLEEVDRVTLTDKGLESELKARAKALSTCRNCGAALHVDWMDCPYCLTPKF

Nucleotide

• Length: 2082 bp

>NTDB_id=25335 CYB_RS10210 WP_011433724.1 2241125..2243206(-) (pilB/pilB1) [Synechococcus sp. JA-2-3B'a(2-13)]
ATGAACGATCTTCCTCCCCCTCCTTTTACCTCGCGCCGCGCCGGCGCTGCCAGCAAAGCTCTGGCCATCGCCAACGTCAG
CATTACCCCCTTTGGCCGCAAGTTAAAGGAGCTGGGCTTTGCCGACGATAAGCAGATCCAGGACATCCAAAACGCCCTCA
AAGCGGATCGAGAGGGCAACAGCAAGGCCCTGGCTCTGGTGGTCAAGGATATCGTGGGCAAAGAGATCACCCCTGACCTG
GAGCGGGCTTACAAACGGCAGCAGCTCTTTGAACTGAAAATCATCTACGGGATCCCCTCCCTGGATGTCGACCTGGAGCC
GGTGGAGATCTCCGAGATGATTGGGCTGATCGACTCGATCTTGCCCCTCGACATCTGCAACCGCTACAAATTCTTGCCCA
TTCGCCGTCGAGACAATCAGGTGACGGTGGCGATGGTCAAGCCAGACAACCTGCAGGCACTGGACGACATTCAACGGCGC
TTCCGCATCCAGGGGCTGAAGCTGCAGCGGCGGGTCTTCACCCAGCGGGATTTCGAGACCCTGATCAGCCGCTACATGGA
TGCGCAGGCGGAGCTGCTGGCCATCAAGGGGATCAACGACGCGGCTGCTGCCCAACAGGCGGCTGCTGCCCAACAGGAAG
AAGAGGTGGTGGTCAACACTGCCGAAATCGATCTGGATGCTATTGAGGATGTGGCTGCCGATGAGGCCGGCGAGGGATCC
CTGGAGCAGCAGGTCAAATCGGCAGATGATGCCCCGATTATTAAACTGTCCAACCAGATCCTGGTCAAGGCCCTGCAGGA
TGGGGCGTCCGACATCCACATCGAGCCACAAGAAGAATACCTGCGCATCCGCTTCCGCAAAGATGGGGTGTTGCGGCAGG
CTTTTGAAAACTTTCCCAAGAAGATCGTCCCCGCCCTCACTGCCCGCTTTAAAATCATCTCCAACCTGAATATTGCCGAG
CGGCGCATGCCCCAGGATGGGCGGATTCGGCGGGTCTTCAAGGGGCGCAAGGTGGACTTTCGGGTCAGCACCCTGCCCTC
CCGCTATGGGGAAAAGATCGTGCTGCGGGTTCTGGACAACTCCGCCACCCAACTGGGGCTGGACAAGCTGATCACCGACC
CAGAGACCTTGGAAAGCTTCAAGGAGATTGTCAGGCGACCCTTTGGCCTAATCTTGGTGACCGGGCCAACGGGATCCGGG
AAAACCACCACCCTCTACTCGGCTCTGGCGGAGGTGAACGATCCGGGCATCAACATCAGCACTGCCGAGGATCCCATTGA
ATACTCGCTGCCGGGGATCACCCAAGTGCAGGTGATCCGAGAAAAGGGCATGGACTTTGCCATGATCCTGCGGGCCTTCT
TGCGGCAAGACCCGGATGTGATCCTGGTGGGGGAAACCCGCGACCACGAGACGGCCAAAACCGCCATCGAAGCCTCCCTC
ACGGGCCACTTGGTGTTGACCACGCTGCACACCAACGATGCCCCTGGCGCCATTGCCCGTCTGACGGAGATGGGGATCGA
GCCATTTATGATCTCCAGCTCGTTGCTGGGGGTGTTGGCCCAGCGCTTGATGCGCCGGGTGTGTACCGAATGTCGGATCC
CCTACCACCCCACGCCGGAGGAGCTGGCCCGCTATGGCCTTACCCTCAGTGGCGACGGCGAGCAGCTCACCTTCTACAAA
GCCAACAAGCTCTCCCCCAAAGAAGTGGAGCAGCGCAAGGCCACCGGCAAGCCCATCTGCGAGAAGTGTGGGGGCGTGGG
CTACAAAGGTCGGGTAGGGGTGTACGAGTTCATGCGCATGAACGACCGCCTTGCGGACTTGATCAACAAAGAGGCCCCCA
CGGAGGTGATCAAAGAAGCGGCGGTGGAAAGTGGCATGAAAACCCTGCTGGCCTACAGTTTGATGCTGGTGAAGCAGGGC
CTCACCACGCTGGAGGAGGTGGATCGGGTGACCCTCACCGACAAGGGTCTGGAAAGCGAGCTGAAGGCCCGTGCCAAGGC
TCTCAGCACCTGCCGCAACTGTGGCGCGGCCTTGCATGTGGACTGGATGGACTGCCCCTATTGCCTGACCCCGAAGTTTT
AG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (39-191)

• Type II/IV secretion system protein (T2SSE) (259-526)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB/pilB1	Synechocystis sp. PCC 6803	58.85	97.835	0.576