Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCF14_RS22880 Genome accession   NZ_CP024282
Coordinates   4451547..4452176 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain 2014C-4356     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4446547..4457176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCF14_RS22865 helD 4446789..4448843 (-) 2055 WP_059215651.1 DNA helicase IV -
  CCF14_RS22870 - 4448966..4449412 (+) 447 WP_001261228.1 YccF domain-containing protein -
  CCF14_RS22875 yccS 4449422..4451587 (+) 2166 WP_000875014.1 YccS family putative transporter -
  CCF14_RS22880 sxy/tfoX 4451547..4452176 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  CCF14_RS22885 sulA 4452394..4452903 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  CCF14_RS22895 ompA 4453259..4454311 (+) 1053 WP_024164823.1 porin OmpA -
  CCF14_RS22900 matP 4454386..4454838 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  CCF14_RS22905 - 4455024..4456784 (+) 1761 WP_059259926.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=253340 CCF14_RS22880 WP_000839162.1 4451547..4452176(-) (sxy/tfoX) [Escherichia albertii strain 2014C-4356]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253340 CCF14_RS22880 WP_000839162.1 4451547..4452176(-) (sxy/tfoX) [Escherichia albertii strain 2014C-4356]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904

Multiple sequence alignment