Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DJ572_RS03305 Genome accession   NZ_CP029461
Coordinates   640426..641556 (+) Length   376 a.a.
NCBI ID   WP_119899103.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 635426..646556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS03285 (DJ572_03285) - 636473..636784 (-) 312 WP_113713055.1 hypothetical protein -
  DJ572_RS03290 (DJ572_03290) - 636906..637298 (-) 393 WP_113713056.1 hypothetical protein -
  DJ572_RS03295 (DJ572_03295) - 637312..639081 (-) 1770 WP_113713057.1 T7SS effector LXG polymorphic toxin -
  DJ572_RS03300 (DJ572_03300) - 639261..640283 (+) 1023 WP_119899101.1 hypothetical protein -
  DJ572_RS03305 (DJ572_03305) rapC 640426..641556 (+) 1131 WP_119899103.1 response regulator aspartate phosphatase RapH Regulator
  DJ572_RS03310 (DJ572_03310) phrH 641546..641719 (+) 174 WP_038427496.1 phosphatase RapH inhibitor PhrH -
  DJ572_RS03315 (DJ572_03315) yeeI 641879..642598 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DJ572_RS03320 (DJ572_03320) - 642732..643127 (+) 396 WP_113713059.1 spore coat protein -
  DJ572_RS03325 (DJ572_03325) yezE 643241..643825 (+) 585 WP_015715467.1 TetR/AcrR family transcriptional regulator -
  DJ572_RS03330 (DJ572_03330) yesE 643904..644347 (+) 444 WP_038427500.1 nuclear transport factor 2 family protein -
  DJ572_RS03335 (DJ572_03335) yesF 644344..645209 (+) 866 Protein_624 NAD-dependent epimerase/dehydratase family protein -
  DJ572_RS03340 (DJ572_03340) cotJA 645339..645587 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  DJ572_RS03345 (DJ572_03345) cotJB 645571..645834 (+) 264 WP_003219491.1 spore coat protein CotJB -
  DJ572_RS03350 (DJ572_03350) cotJC 645849..646418 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44023.32 Da        Isoelectric Point: 6.1167

>NTDB_id=253320 DJ572_RS03305 WP_119899103.1 640426..641556(+) (rapC) [Bacillus subtilis strain QB61]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPIVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQIAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKTGQTQRAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAKFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=253320 DJ572_RS03305 WP_119899103.1 640426..641556(+) (rapC) [Bacillus subtilis strain QB61]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGATTGTGTCTG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATAGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAGACAGGTCAAACACAGCGGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTAAGTTTTACCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.16

100

0.402
  rapF Bacillus subtilis subsp. subtilis str. 168

39.257

100

0.394