Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DJ572_RS02540 Genome accession   NZ_CP029461
Coordinates   482595..483236 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain QB61     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 477595..488236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS02510 (DJ572_02510) ydfE 478824..479447 (-) 624 WP_029725823.1 flavin reductase family protein -
  DJ572_RS02515 (DJ572_02515) ydfF 479536..480216 (+) 681 WP_119899057.1 winged helix-turn-helix domain-containing protein -
  DJ572_RS02520 (DJ572_02520) ydfG 480284..480727 (-) 444 WP_029725825.1 carboxymuconolactone decarboxylase family protein -
  DJ572_RS02525 (DJ572_02525) - 480815..480991 (-) 177 WP_080348091.1 hypothetical protein -
  DJ572_RS02530 (DJ572_02530) - 480988..481131 (-) 144 WP_014478971.1 hypothetical protein -
  DJ572_RS02535 (DJ572_02535) ydfH 481379..482602 (+) 1224 WP_032678641.1 two-component system sensor histidine kinase YdfH -
  DJ572_RS02540 (DJ572_02540) vraR 482595..483236 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  DJ572_RS02545 (DJ572_02545) pleJ 483352..485526 (+) 2175 WP_032678643.1 MMPL family transporter -
  DJ572_RS02550 (DJ572_02550) cesA 485939..486841 (-) 903 WP_029725828.1 carboxylesterase -
  DJ572_RS02555 (DJ572_02555) ydfK 487044..487733 (-) 690 WP_019712443.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=253318 DJ572_RS02540 WP_003244318.1 482595..483236(+) (vraR) [Bacillus subtilis strain QB61]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=253318 DJ572_RS02540 WP_003244318.1 482595..483236(+) (vraR) [Bacillus subtilis strain QB61]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTTTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCAAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362