Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   DJ572_RS01955 Genome accession   NZ_CP029461
Coordinates   385032..385466 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain QB61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 380032..390466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS01925 (DJ572_01920) ydaD 380682..381542 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  DJ572_RS01930 (DJ572_01925) lyxE 381558..382061 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  DJ572_RS01935 (DJ572_01930) ydaF 382147..382698 (+) 552 WP_003246691.1 GNAT family protein -
  DJ572_RS01940 (DJ572_01935) ydaG 382776..383198 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  DJ572_RS01945 (DJ572_01940) amj 383704..384513 (+) 810 WP_003234394.1 lipid II flippase Amj -
  DJ572_RS01950 (DJ572_01945) ydzA 384557..384847 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  DJ572_RS01955 (DJ572_01950) lrpC 385032..385466 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  DJ572_RS01960 (DJ572_01955) topB 385531..387714 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  DJ572_RS01965 (DJ572_01960) ephJ 387917..389005 (+) 1089 WP_029726557.1 hypothetical protein -
  DJ572_RS01970 (DJ572_01965) epsK 388986..389837 (+) 852 WP_113713036.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=253316 DJ572_RS01955 WP_003246585.1 385032..385466(+) (lrpC) [Bacillus subtilis strain QB61]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=253316 DJ572_RS01955 WP_003246585.1 385032..385466(+) (lrpC) [Bacillus subtilis strain QB61]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1