Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CS031_RS14530 Genome accession   NZ_CP024278
Coordinates   2724264..2724893 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ATCC 43896     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719264..2729893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS031_RS14515 helD 2719506..2721560 (-) 2055 WP_000420533.1 DNA helicase IV -
  CS031_RS14520 yccF 2721683..2722129 (+) 447 WP_001261231.1 YccF domain-containing protein -
  CS031_RS14525 yccS 2722139..2724301 (+) 2163 WP_000875044.1 YccS family putative transporter -
  CS031_RS14530 sxy/tfoX 2724264..2724893 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CS031_RS14535 sulA 2725112..2725621 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CS031_RS14545 ompA 2725978..2727030 (+) 1053 WP_000750419.1 porin OmpA -
  CS031_RS14550 matP 2727105..2727557 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CS031_RS14555 ycbZ 2727743..2729503 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253308 CS031_RS14530 WP_000839153.1 2724264..2724893(-) (sxy/tfoX) [Escherichia coli strain ATCC 43896]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253308 CS031_RS14530 WP_000839153.1 2724264..2724893(-) (sxy/tfoX) [Escherichia coli strain ATCC 43896]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment