Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DFS94_RS21820 Genome accession   NZ_CP029420
Coordinates   4419403..4420008 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 3385     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4414403..4425008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFS94_RS21790 (DFS94_22865) rsmS 4415105..4415269 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  DFS94_RS21795 (DFS94_22870) priC 4415283..4415810 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  DFS94_RS21800 (DFS94_22875) ybaN 4415880..4416257 (+) 378 WP_001188900.1 DUF454 family protein -
  DFS94_RS21805 (DFS94_22885) apt 4416410..4416961 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DFS94_RS21810 (DFS94_22890) dnaX 4417090..4419021 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  DFS94_RS21815 (DFS94_22895) ybaB 4419074..4419403 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DFS94_RS21820 (DFS94_22900) recR 4419403..4420008 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DFS94_RS21825 (DFS94_22905) htpG 4420118..4421992 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  DFS94_RS21830 (DFS94_22915) adk 4422173..4422817 (+) 645 WP_001220233.1 adenylate kinase -
  DFS94_RS21835 (DFS94_22920) hemH 4422949..4423911 (+) 963 WP_001250114.1 ferrochelatase -
  DFS94_RS21840 (DFS94_22925) aes 4423908..4424867 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=253294 DFS94_RS21820 WP_001195025.1 4419403..4420008(+) (recR) [Escherichia coli strain 3385]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=253294 DFS94_RS21820 WP_001195025.1 4419403..4420008(+) (recR) [Escherichia coli strain 3385]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443