Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COG40_RS05875 Genome accession   NZ_CP024275
Coordinates   1144008..1144637 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O6:H16 strain M9682-C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139008..1149637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG40_RS05850 ycbZ 1139409..1141169 (-) 1761 WP_000156518.1 Lon protease family protein -
  COG40_RS05855 matP 1141355..1141807 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  COG40_RS05860 ompA 1141883..1142923 (-) 1041 WP_000750416.1 porin OmpA -
  COG40_RS05870 sulA 1143280..1143789 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  COG40_RS05875 sxy/tfoX 1144008..1144637 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  COG40_RS05880 yccS 1144600..1146762 (-) 2163 WP_000875061.1 YccS family putative transporter -
  COG40_RS05885 yccF 1146772..1147218 (-) 447 WP_001261235.1 YccF domain-containing protein -
  COG40_RS05890 helD 1147341..1149395 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253277 COG40_RS05875 WP_000839153.1 1144008..1144637(+) (sxy/tfoX) [Escherichia coli O6:H16 strain M9682-C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253277 COG40_RS05875 WP_000839153.1 1144008..1144637(+) (sxy/tfoX) [Escherichia coli O6:H16 strain M9682-C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment