Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCV27_RS23110 Genome accession   NZ_CP024269
Coordinates   4600198..4600827 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain F8111-1SC3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4595198..4605827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCV27_RS23085 ycbZ 4595587..4597347 (-) 1761 WP_001612759.1 Lon protease family protein -
  CCV27_RS23090 matP 4597533..4597985 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CCV27_RS23095 ompA 4598062..4599114 (-) 1053 WP_001307702.1 porin OmpA -
  CCV27_RS23105 - 4599635..4599979 (-) 345 WP_349642565.1 SulA-like leucine-rich domain-containing protein -
  CCV27_RS23110 sxy/tfoX 4600198..4600827 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CCV27_RS23115 yccS 4600790..4602952 (-) 2163 WP_000323868.1 YccS family putative transporter -
  CCV27_RS23120 yccF 4602962..4603408 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CCV27_RS23125 helD 4603531..4605585 (+) 2055 WP_001612761.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=253251 CCV27_RS23110 WP_001612760.1 4600198..4600827(+) (sxy/tfoX) [Escherichia coli strain F8111-1SC3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253251 CCV27_RS23110 WP_001612760.1 4600198..4600827(+) (sxy/tfoX) [Escherichia coli strain F8111-1SC3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment