Detailed information NTG0253242

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DFS94_RS09935
• Genome accession: NZ_CP029420
• Coordinates: 1950078..1951070 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 3385
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1945078..1956070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DFS94_RS09915 (DFS94_10365)	ygbM	1945716..1946492 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
DFS94_RS09920 (DFS94_10370)	ygbN	1946581..1947945 (+)	1365	WP_000104433.1	GntP family transporter	-
DFS94_RS09925 (DFS94_10375)	-	1948088..1949131 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
DFS94_RS09930 (DFS94_10380)	-	1949356..1949907 (+)	552	WP_001179444.1	flavodoxin family protein	-
DFS94_RS09935 (DFS94_10385)	rpoS	1950078..1951070 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DFS94_RS09940 (DFS94_10390)	nlpD	1951133..1952227 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
DFS94_RS09945 (DFS94_10395)	pcm	1952412..1953038 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DFS94_RS09950 (DFS94_10400)	surE	1953032..1953793 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DFS94_RS09955 (DFS94_10405)	truD	1953774..1954823 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
DFS94_RS09960 (DFS94_10410)	ispF	1954820..1955299 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DFS94_RS09965 (DFS94_10415)	ispD	1955299..1956009 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=253242 DFS94_RS09935 WP_000081550.1 1950078..1951070(-) (rpoS) [Escherichia coli strain 3385]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=253242 DFS94_RS09935 WP_000081550.1 1950078..1951070(-) (rpoS) [Escherichia coli strain 3385]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715