Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DFS94_RS09635 Genome accession   NZ_CP029420
Coordinates   1897948..1898463 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain 3385     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892948..1903463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFS94_RS09615 (DFS94_10075) emrA 1893096..1894268 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DFS94_RS09620 (DFS94_10080) emrB 1894285..1895823 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  DFS94_RS09625 (DFS94_10085) - 1896081..1896788 (+) 708 WP_001097132.1 RNA ligase family protein -
  DFS94_RS09630 (DFS94_10090) - 1896785..1897897 (+) 1113 WP_000638136.1 ATP-binding protein -
  DFS94_RS09635 (DFS94_10095) luxS 1897948..1898463 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  DFS94_RS09640 (DFS94_10100) gshA 1898613..1900169 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  DFS94_RS09645 (DFS94_10105) yqaA 1900242..1900670 (-) 429 WP_001287462.1 YqaA family protein -
  DFS94_RS09650 (DFS94_10110) yqaB 1900667..1901233 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DFS94_RS09680 (DFS94_10140) csrA 1902422..1902607 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=253239 DFS94_RS09635 WP_001130208.1 1897948..1898463(-) (luxS) [Escherichia coli strain 3385]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=253239 DFS94_RS09635 WP_001130208.1 1897948..1898463(-) (luxS) [Escherichia coli strain 3385]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment