Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DF184_RS10135 Genome accession   NZ_CP029398
Coordinates   2055006..2055455 (-) Length   149 a.a.
NCBI ID   WP_109372078.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2050006..2060455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS10120 (DF184_10120) - 2050478..2051107 (+) 630 WP_014638747.1 ABC transporter ATP-binding protein -
  DF184_RS10125 (DF184_10125) - 2051322..2053106 (-) 1785 WP_105116089.1 ABC transporter ATP-binding protein -
  DF184_RS10130 (DF184_10130) - 2053307..2055013 (-) 1707 WP_105138833.1 ABC transporter ATP-binding protein -
  DF184_RS10135 (DF184_10135) rcrR 2055006..2055455 (-) 450 WP_109372078.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DF184_RS10140 (DF184_10140) - 2055677..2056693 (+) 1017 WP_024384184.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DF184_RS10145 (DF184_10145) galU 2056739..2057638 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DF184_RS10150 (DF184_10150) - 2057660..2058337 (-) 678 WP_109372080.1 rhomboid family intramembrane serine protease -
  DF184_RS10155 (DF184_10155) - 2058321..2058863 (-) 543 WP_109372082.1 5-formyltetrahydrofolate cyclo-ligase -
  DF184_RS10160 (DF184_10160) - 2058905..2060032 (-) 1128 WP_044674691.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17622.16 Da        Isoelectric Point: 8.1233

>NTDB_id=253208 DF184_RS10135 WP_109372078.1 2055006..2055455(-) (rcrR) [Streptococcus suis strain HN105]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMRHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=253208 DF184_RS10135 WP_109372078.1 2055006..2055455(-) (rcrR) [Streptococcus suis strain HN105]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCGCCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416